View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3576_low_73 (Length: 207)
Name: NF3576_low_73
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_low_73 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 22217647 - 22217819
Alignment:
| Q |
18 |
tgatgggtatgtttgaatttggtggaggaacgttttcaagattggatttagggtttgaagaaatgggtttgcgaaaggatgaaattggaagaaggttttt |
117 |
Q |
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| T |
22217647 |
tgatgggtatgtttgaatttggtggaggaacgttttcaagattggatttagggtttgaagaaatgggtttacggaaggatgaaattggaagaaggttttt |
22217746 |
T |
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| Q |
118 |
gattgaagttgaagtgaaggttccgaagaaactattatc---gttgttattgttgttctttggcttcattgtt |
187 |
Q |
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| T |
22217747 |
gattgaagttgaagtgaaggttccgaagaaactgttatcgttgttgttgttgttgttctttggcttcattgtt |
22217819 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 8985360 - 8985407
Alignment:
| Q |
40 |
tggaggaacgttttcaagattggatttagggtttgaagaaatgggttt |
87 |
Q |
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| T |
8985360 |
tggagcaatgttttcaagattggatttagggtttgaagaaattggttt |
8985407 |
T |
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