View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3576_low_9 (Length: 499)
Name: NF3576_low_9
Description: NF3576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3576_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 476
Target Start/End: Original strand, 6209050 - 6209493
Alignment:
| Q |
18 |
cagagaaccacagggaggtgttaatgtcttctacattggaaataagcttaactaactttg--------gtttgtgtaatttaatggattttgttagggga |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
6209050 |
cagagaaccacagggaggtgttaatgtcttctacattggaaataagcttaactaactttggttttttggtttgtgtaatttaatggattttgttagggga |
6209149 |
T |
|
| Q |
110 |
caagctgaaagagagtttaaggttgaggtggaagctataggaagagttcgtcataagaatttagtgaggttgcttggttattgtgctgaaggagctcata |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6209150 |
caagctgaaagagagtttaaggttgaggtggaagctataggaagagttcgtcataagaatttagtgaggttgcttggttattgtgctgaaggagctcata |
6209249 |
T |
|
| Q |
210 |
ggtactactagtgttcttcgatttaatttaatttacatgcttttatttctgcattatcatcatattatgcttatgcaagtatcataattataagtataaa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
6209250 |
ggtactactagtgttcttcgatttaatttaatttacatgcttttatttctgcattattatcat----------------------aattataagtataaa |
6209327 |
T |
|
| Q |
310 |
ctgattgggtgtttttattctcttaacagaatgttagtgtatgagtttgttgacaatggtaacttggagcaatggttacatggtgatgttggaccttgta |
409 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6209328 |
ctgatggggtgtttttattctcttaacagaatgttagtgtatgagtttgttgacaatggtaacttggagcaatggttacatggtgatgttggaccttgta |
6209427 |
T |
|
| Q |
410 |
gtcctttaacttgggaaattcgaatgaacattattcttggaacggcaaaagggtaaaacactaagca |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
6209428 |
gtcctttaacttgggaaattcgaatgaacattattcttggaacggcgaaagggt-aaacactaagca |
6209493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 463
Target Start/End: Complemental strand, 54531405 - 54531299
Alignment:
| Q |
357 |
tgttgacaatggtaacttggagcaatggttacatggtgatgttggaccttgtagtcctttaacttgggaaattcgaatgaacattattcttggaacggca |
456 |
Q |
| |
|
|||||||||||| || || ||||| ||| | ||||||||||| |||||| ||| ||||| |||||||| || |||||||| ||| | |||| || ||| |
|
|
| T |
54531405 |
tgttgacaatggaaatttagagcagtggctgcatggtgatgtaggacctgttagccctttgacttgggatatacgaatgaagattgctgttgggactgca |
54531306 |
T |
|
| Q |
457 |
aaagggt |
463 |
Q |
| |
|
||||||| |
|
|
| T |
54531305 |
aaagggt |
54531299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University