View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3577_high_1 (Length: 849)
Name: NF3577_high_1
Description: NF3577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3577_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 458 - 831
Target Start/End: Complemental strand, 7646081 - 7645711
Alignment:
| Q |
458 |
tatgtgttctgagatggattaatattgtgaagggatgtgatgtctcattcctttggagaagggtatgctacgaggtctgatgaagaaggatttggaggga |
557 |
Q |
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| T |
7646081 |
tatgtgttctgagatggattaatattgtgaagggatgtgatgtctcattcctttggagaagggtatgctacaaggtctgatgaagaaggatttggaggga |
7645982 |
T |
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| Q |
558 |
tatatagtggaaaccaatcccttcagaaagataagtccgtccatgaaaatcacccaggttataattagttaatttgcttatgatcatacatggacaacta |
657 |
Q |
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| T |
7645981 |
tatatggtggaaaccaatcccttcagaaagataagtccgtccatgaaaatcacccaggttataattagttaatttgcttatgatcatacatggacaacta |
7645882 |
T |
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| Q |
658 |
gnnnnnnnccttacgtttaaaacattttacaccgtcaatttcttattacttttgtagaggtcatgatggaaattaattattaagcctaattcagacttgt |
757 |
Q |
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| T |
7645881 |
gtttttttccttacgtttaaaacattttacaccgtcattttcttattacttttgtagaggtc---atggaaattaattattaagcctaattaagacttgt |
7645785 |
T |
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| Q |
758 |
ttgtttttgtgcatgaagattatgacaagacacagggaagcgaggtgaaagagaaggaaaaagctaggcaccag |
831 |
Q |
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| T |
7645784 |
ttgtttttgtgcatgaagattatgacaagacacagggaagcgaggtgaaagagaaggaaaaagctaggcaccag |
7645711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 370
Target Start/End: Complemental strand, 7646527 - 7646166
Alignment:
| Q |
16 |
tcaacaaaagtctagtagtgagaaaaaggaaactactgaacatgggtgagctcaaatcacgtaatttataatcttcatgtgattgatttatcagtttact |
115 |
Q |
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| T |
7646527 |
tcaacaaaagtctagtagtgagaaaaaggaaactactgaacatgggtgagctcaaatcacgtaatttataatcttcatgtgattgatttatcagtttact |
7646428 |
T |
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| Q |
116 |
atcctattagggaatgg-tttatcgtgtttgtttttaacttcttcaatttctcttatt----nnnnnnnnnnnnnncaaatttgctatcatgatttacaa |
210 |
Q |
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| T |
7646427 |
atcctattagggaatggttttatcgtgtttgtttttaacttcttcaatttctcttattaaaaaaaaaaaaaaaaaacaaattcgctatcatgatttacaa |
7646328 |
T |
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| Q |
211 |
catgcactaactatttgtgctaggcatcaacgataaataaattaattgatgtgttatttttaatccaaggagccaatttagattcatatgatca-nnnnn |
309 |
Q |
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| T |
7646327 |
catgcactaactatttgtgctaggcatcaacgataaataaattaattgatgtgttatttttaatcgaaggagccaatttagattcatatgttcatttttt |
7646228 |
T |
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| Q |
310 |
nnncattactaagacaaataaattaacaatgaaaacttagaggac-aaacaaaattaaatat |
370 |
Q |
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| T |
7646227 |
tttcattactaagacaaataaattaacaatgaaaacttagaggacaaaaaaaaattaaatat |
7646166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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