View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3577_high_10 (Length: 386)

Name: NF3577_high_10
Description: NF3577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3577_high_10
NF3577_high_10
[»] chr1 (8 HSPs)
chr1 (9-252)||(26833124-26833367)
chr1 (105-243)||(26786432-26786570)
chr1 (109-236)||(26823309-26823436)
chr1 (119-236)||(26799228-26799345)
chr1 (323-386)||(26833438-26833501)
chr1 (323-386)||(26799425-26799488)
chr1 (323-386)||(26786649-26786712)
chr1 (133-223)||(41545969-41546059)
[»] chr7 (1 HSPs)
chr7 (120-223)||(41916992-41917095)
[»] chr6 (1 HSPs)
chr6 (325-368)||(2021636-2021679)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 9 - 252
Target Start/End: Original strand, 26833124 - 26833367
Alignment:
Q  9 gaaatgaaaaaccgatataaatgactgaagtgtctaacaagtaacaagagaaccgaaatggaagnnnnnnnnttaaggtgacaaaagttctcattagttt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||        ||||||||||||||||||||||||||||    
T  26833124 gaaatgaaaaaccgatataaatgactgaagtgtctaacaagtaacaagagaaccaaaatggaagaaaaaaaattaaggtgacaaaagttctcattagttt 26833223  T
Q  109 tgtagcatagataccttaattgtaggatcagttgaatcatcaagaatttgtatgatgatcctatcagaaggccatgagagtccacatgcagcaccaattg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26833224 tgtagcatagataccttaattgtaggatcagttgaatcatcaagaatttgtatgatgatcctatcagaaggccatgagagtccacatgcagcaccaattg 26833323  T
Q  209 ataactgataaacctgcattttgaacaatttatatgtcaatttc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  26833324 ataactgataaacctgcattttgaacaatttatatgtcaatttc 26833367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 105 - 243
Target Start/End: Original strand, 26786432 - 26786570
Alignment:
Q  105 gttttgtagcatagataccttaattgtaggatcagttgaatcatcaagaatttgtatgatgatcctatcagaaggccatgagagtccacatgcagcacca 204  Q
    ||||||||||||| ||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||    
T  26786432 gttttgtagcatatataccttgattgttgggtcagttgaatcatcaagaatttgtatgatgattctatcagaaggccaagagagttcacatgcagcacca 26786531  T
Q  205 attgataactgataaacctgcattttgaacaatttatat 243  Q
    ||||||| ||||||||||| ||||| |||| || |||||    
T  26786532 attgatagctgataaacctacatttagaaccatatatat 26786570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 109 - 236
Target Start/End: Original strand, 26823309 - 26823436
Alignment:
Q  109 tgtagcatagataccttaattgtaggatcagttgaatcatcaagaatttgtatgatgatcctatcagaaggccatgagagtccacatgcagcaccaattg 208  Q
    ||||||||  ||||||| ||||| || ||||| |||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  26823309 tgtagcatgtataccttgattgttgggtcagtggaatcatcaagaatttgtatgatgattctatcagaaggccaagagagttcacatgcagcaccaattg 26823408  T
Q  209 ataactgataaacctgcattttgaacaa 236  Q
    |||||||||||||||||| | |||||||    
T  26823409 ataactgataaacctgcaatatgaacaa 26823436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 26799228 - 26799345
Alignment:
Q  119 ataccttaattgtaggatcagttgaatcatcaagaatttgtatgatgatcctatcagaaggccatgagagtccacatgcagcaccaattgataactgata 218  Q
    ||||||| || || || ||||| |||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||| ||||||    
T  26799228 ataccttgatggttgggtcagtggaatcatcaagaatttgtatgatgattctatcagaaggccaagagagttcacatgcagcaccaattgatagctgata 26799327  T
Q  219 aacctgcattttgaacaa 236  Q
    |||||||| |||||||||    
T  26799328 aacctgcaatttgaacaa 26799345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 323 - 386
Target Start/End: Original strand, 26833438 - 26833501
Alignment:
Q  323 tcacctctctttcattatacattggaacttgaacaagaaccatagggtaattagagtttcccaa 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26833438 tcacctctctttcattatacattggaacttgaacaagaaccatagggtaattagagtttcccaa 26833501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 323 - 386
Target Start/End: Original strand, 26799425 - 26799488
Alignment:
Q  323 tcacctctctttcattatacattggaacttgaacaagaaccatagggtaattagagtttcccaa 386  Q
    |||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||    
T  26799425 tcacctctctttcattgtacattggaacttgaacaagaaccatgggataattagagtttcccaa 26799488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 323 - 386
Target Start/End: Original strand, 26786649 - 26786712
Alignment:
Q  323 tcacctctctttcattatacattggaacttgaacaagaaccatagggtaattagagtttcccaa 386  Q
    |||||||||||||||| |||||||| | |||||||||||| |||||||||||||||||| ||||    
T  26786649 tcacctctctttcattgtacattgggatttgaacaagaacaatagggtaattagagttttccaa 26786712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 223
Target Start/End: Complemental strand, 41546059 - 41545969
Alignment:
Q  133 ggatcagttgaatcatcaagaatttgtatgatgatcctatcagaaggccatgagagtccacatgcagcaccaattgataactgataaacct 223  Q
    ||||| ||||| |||||||||| ||| || || || |||||||| |||||||| |  ||||||||||| ||||||||||| ||||| ||||    
T  41546059 ggatctgttgagtcatcaagaacttgaataataattctatcagatggccatgataacccacatgcagctccaattgataattgatacacct 41545969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 41917095 - 41916992
Alignment:
Q  120 taccttaattgtaggatcagttgaatcatcaagaatttgtatgatgatcctatcagaaggccatgagagtccacatgcagcaccaattgataactgataa 219  Q
    |||||| ||||| || ||||| || |||||||||| |||||| ||||||||||||||||||||||| || ||||||||||| |||||||| || ||||||    
T  41917095 taccttgattgttgggtcagtggagtcatcaagaacttgtataatgatcctatcagaaggccatgaaagaccacatgcagctccaattgacaattgataa 41916996  T
Q  220 acct 223  Q
    ||||    
T  41916995 acct 41916992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 368
Target Start/End: Complemental strand, 2021679 - 2021636
Alignment:
Q  325 acctctctttcattatacattggaacttgaacaagaaccatagg 368  Q
    ||||||||||||||| |||||||||  |||||||||||||||||    
T  2021679 acctctctttcattacacattggaatctgaacaagaaccatagg 2021636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University