View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3577_high_17 (Length: 247)
Name: NF3577_high_17
Description: NF3577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3577_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 44117322 - 44117564
Alignment:
| Q |
1 |
ttgaatatgatttaattgaacatttttacttgcaatttagatcttccgtcttccatcaatcatgatctgatagagttcacgccactcccacggtgatcta |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44117322 |
ttgaaaatgatttaattgaacatttttacttgcaatttagatcttccgtcttccatcaatcatgatctgatagagttcacgccactcccacggtgaccta |
44117421 |
T |
|
| Q |
101 |
ttttctgttaaa-ggaaatttaaaatgacaaaatattggctgccaaggagaaatagaagtaagaacatgaaatctaaataaaagagcacaaattcatagt |
199 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44117422 |
ttttctgttaaaaggaaatttaaaatgacaaaatattggctgccaaggagaaatagaagtaagaacatgaaatctaaataaaagagcacaaattcatagt |
44117521 |
T |
|
| Q |
200 |
ataagtattgatcaaatcgattaccattccttagccctatgct |
242 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44117522 |
ataagtattgatcaaatcgattaccattccttagcccaatgct |
44117564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 8773668 - 8773789
Alignment:
| Q |
1 |
ttgaatatgatttaattgaacatttttacttgcaatttagatcttccgtcttccatcaatcatgatctgatagagttcacgccactcccacggtgatcta |
100 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||| || |
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| T |
8773668 |
ttgaaaatgattttattgaacatttttacttgcaatttagatcttccatcttccatcagtcatgatctgatagagttcacgccgctcccacggtgacctc |
8773767 |
T |
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| Q |
101 |
ttttctgttaaaggaaatttaa |
122 |
Q |
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|||||||||||||||||||||| |
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| T |
8773768 |
ttttctgttaaaggaaatttaa |
8773789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 123 - 234
Target Start/End: Original strand, 8774164 - 8774267
Alignment:
| Q |
123 |
aatgacaaaatattggctgccaaggagaaatagaagtaagaacatgaaatctaaataaaagagcacaaattcatagtataagtattgatcaaatcgatta |
222 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
8774164 |
aatgacaaaatattggctgtcaaggagaaatagaag----aacatgaaatctaaa----agagcacaaattcatagtataagtattgatcaaatcaatta |
8774255 |
T |
|
| Q |
223 |
ccattccttagc |
234 |
Q |
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|||||||||||| |
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| T |
8774256 |
ccattccttagc |
8774267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 1693704 - 1693583
Alignment:
| Q |
1 |
ttgaatatgatttaattgaacatttttacttgcaatttagatcttccgtcttccatcaatcatgatctgatagagttcacgccactcccacggtgatcta |
100 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||| || |
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| T |
1693704 |
ttgaaaatgattttattgaacatttttacttgcaatttagatcttccatcttccatcagtcatgatctgatagagttcacgccgctcccacggtgacctc |
1693605 |
T |
|
| Q |
101 |
ttttctgttaaaggaaatttaa |
122 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
1693604 |
ttttctgttaaaggaaatttaa |
1693583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 123 - 242
Target Start/End: Complemental strand, 6224199 - 6224084
Alignment:
| Q |
123 |
aatgacaaaatattggctgccaaggagaaatagaagtaagaacatgaaatctaaataaaagagcacaaattcatagtataagtattgatcaaatcgatta |
222 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
6224199 |
aatgacaaaatattggctgtcaaggagaaatagaagtaagaacatgaaatctaaa----agagcacaaattcatagtataagtattgatcaaatcaatta |
6224104 |
T |
|
| Q |
223 |
ccattccttagccctatgct |
242 |
Q |
| |
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|||||||||||| ||||||| |
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| T |
6224103 |
ccattccttagctctatgct |
6224084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 123 - 234
Target Start/End: Complemental strand, 1693208 - 1693105
Alignment:
| Q |
123 |
aatgacaaaatattggctgccaaggagaaatagaagtaagaacatgaaatctaaataaaagagcacaaattcatagtataagtattgatcaaatcgatta |
222 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
1693208 |
aatgacaaaatattggctgtcaaggagaaatagaag----aacatgaaatctaaa----agagcacaaattcatagtataagtattgatcaaatcaatta |
1693117 |
T |
|
| Q |
223 |
ccattccttagc |
234 |
Q |
| |
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|||||||||||| |
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|
| T |
1693116 |
ccattccttagc |
1693105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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