View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3577_high_2 (Length: 562)

Name: NF3577_high_2
Description: NF3577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3577_high_2
NF3577_high_2
[»] chr5 (3 HSPs)
chr5 (9-371)||(6419637-6420014)
chr5 (419-479)||(6419526-6419586)
chr5 (420-460)||(43007762-43007802)
[»] chr2 (2 HSPs)
chr2 (420-513)||(24026708-24026801)
chr2 (420-460)||(14902316-14902356)
[»] chr7 (5 HSPs)
chr7 (420-510)||(20246659-20246749)
chr7 (415-512)||(6391654-6391749)
chr7 (420-461)||(26772622-26772663)
chr7 (420-513)||(37808026-37808119)
chr7 (420-460)||(30275327-30275367)
[»] chr4 (5 HSPs)
chr4 (420-514)||(41668850-41668944)
chr4 (420-461)||(7372650-7372691)
chr4 (421-462)||(21124579-21124620)
chr4 (421-462)||(21144669-21144710)
chr4 (428-460)||(53423277-53423309)
[»] chr3 (4 HSPs)
chr3 (421-510)||(1543202-1543291)
chr3 (420-460)||(43790658-43790698)
chr3 (420-482)||(24481334-24481396)
chr3 (420-460)||(9107110-9107150)
[»] chr8 (3 HSPs)
chr8 (420-456)||(2296681-2296717)
chr8 (420-460)||(9315445-9315485)
chr8 (424-460)||(32236988-32237024)
[»] chr1 (2 HSPs)
chr1 (426-506)||(5450636-5450716)
chr1 (420-460)||(6587114-6587154)


Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 371
Target Start/End: Complemental strand, 6420014 - 6419637
Alignment:
Q  9 agcagagacatttaagaagaagggtcaaaatactattttcattcaagtttgaagagtnnnnnnnnnngtggcacagtgacagagtcacagttacagagag 108  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||    
T  6420014 agcagtgacatttaagaagaagggtcaaaatactattttcattcaagtttgaagagtaaaaaaaaaagtggcacagtgacagagtcacagttacagagag 6419915  T
Q  109 gagcggcaatggcatgcatgcagagagcacagctatgctaattgacccaactttgctttgactccattactattact---------------attattat 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||    
T  6419914 gagcggcaatggcatgcatgcagagagcacagctatgctaattgacccaactttgctttgactccattactattacttttattattattattattattat 6419815  T
Q  194 tattaacaaacaaagcaatgggaatgagctggcgacattgattgatcaaagttagtactagactagcagtcaccacgtgatccagggttcaattttaact 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6419814 tattaacaaacaaagcaatgggaatgagctggcgacattgattgatcaaagttagtactagactagcagtcaccacgtgatccagggtttaattttaact 6419715  T
Q  294 taattctaatgtgattttgaatccaaattttacaataaactagcattatacccgtgcttttgcaatggtcatgcaata 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6419714 taattctaatgtgattttgaatccaaattttacaataaactagcataatacccgtgcttttgcaatggtcatgcaata 6419637  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 419 - 479
Target Start/End: Complemental strand, 6419586 - 6419526
Alignment:
Q  419 atttttatatcaaatttgatgtttatatatatttattagttaaagcctaatttataggttc 479  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||    
T  6419586 atttttatatcaagtttgatgtttatatatatttattagttaaagcttaatttgtaggttc 6419526  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 460
Target Start/End: Original strand, 43007762 - 43007802
Alignment:
Q  420 tttttatatcaaatttgatgtttatatatatttattagtta 460  Q
    ||||| ||||||| |||||||||||||||| ||||||||||    
T  43007762 tttttgtatcaaacttgatgtttatatataattattagtta 43007802  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 420 - 513
Target Start/End: Original strand, 24026708 - 24026801
Alignment:
Q  420 tttttatatcaaatttgatgtttatatatatttattagttaaagcctaatttataggttcgctttagactatcaaaatctcaaaaacggccctg 513  Q
    |||||||||||||||| |||||||||||||||||||||||||   |||| || |||||||||  ||||| | ||||||||||||| ||||||||    
T  24026708 tttttatatcaaatttaatgtttatatatatttattagttaagatctaaattgtaggttcgccctagaccaccaaaatctcaaaatcggccctg 24026801  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 14902356 - 14902316
Alignment:
Q  420 tttttatatcaaatttgatgtttatatatatttattagtta 460  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  14902356 tttttgtatcaaatttgatgtttatatatatttattagtta 14902316  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 420 - 510
Target Start/End: Complemental strand, 20246749 - 20246659
Alignment:
Q  420 tttttatatcaaatttgatgtttatatatatttattagttaaagcctaatttataggttcgctttagactatcaaaatctcaaaaacggcc 510  Q
    ||||||||||||||||||||||||||||| |||||||||||   ||||| |||||||||| |  ||| | | |||||||||| ||||||||    
T  20246749 tttttatatcaaatttgatgtttatatatgtttattagttatgacctaaattataggttcaccataggccaccaaaatctcataaacggcc 20246659  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 415 - 512
Target Start/End: Original strand, 6391654 - 6391749
Alignment:
Q  415 ttaaatttttatatcaaatttgatgtttatatatatttattagttaaagcctaatttataggttcgctttagactatcaaaatctcaaaaacggccct 512  Q
    |||| ||||||||| ||||||||||||||||  ||||||||||||| |  | || ||||||||| ||||||  | |||||||| ||||||||||||||    
T  6391654 ttaattttttatattaaatttgatgtttata--tatttattagttataatcaaaattataggtttgctttatgccatcaaaatttcaaaaacggccct 6391749  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 461
Target Start/End: Complemental strand, 26772663 - 26772622
Alignment:
Q  420 tttttatatcaaatttgatgtttatatatatttattagttaa 461  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  26772663 tttttatataaaatttgatgtttatatatatttattagttaa 26772622  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 513
Target Start/End: Complemental strand, 37808119 - 37808026
Alignment:
Q  420 tttttatatcaaatttgatgtttatatatatttattagttaaagcctaatttataggttcgctttagactatcaaaatctcaaaaacggccctg 513  Q
    ||||||||| || ||| ||||||||||||||||||||||||   ||||| ||||||| ||||  || || | |||||||||| |||||||||||    
T  37808119 tttttatatgaagttttatgtttatatatatttattagttaggacctaaattataggctcgccctaaaccaccaaaatctcataaacggccctg 37808026  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 30275367 - 30275327
Alignment:
Q  420 tttttatatcaaatttgatgtttatatatatttattagtta 460  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  30275367 tttttgtatcaagtttgatgtttatatatatttattagtta 30275327  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 420 - 514
Target Start/End: Complemental strand, 41668944 - 41668850
Alignment:
Q  420 tttttatatcaaatttgatgtttatatatatttattagttaaagcctaatttataggttcgctttagactatcaaaatctcaaaaacggccctga 514  Q
    ||||| |||||| ||||||||||||||||||||||||||||   || || ||||||||||||  ||| | | |||||||||| ||| ||||||||    
T  41668944 tttttgtatcaagtttgatgtttatatatatttattagttaggacccaaattataggttcgccctaggccaccaaaatctcagaaaaggccctga 41668850  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 420 - 461
Target Start/End: Original strand, 7372650 - 7372691
Alignment:
Q  420 tttttatatcaaatttgatgtttatatatatttattagttaa 461  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  7372650 tttttgtatcaaatttgatgtttatatatatttattagttaa 7372691  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 462
Target Start/End: Original strand, 21124579 - 21124620
Alignment:
Q  421 ttttatatcaaatttgatgtttatatatatttattagttaaa 462  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  21124579 ttttatatcaagtttgatgtttatatatatttattagttaaa 21124620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 462
Target Start/End: Original strand, 21144669 - 21144710
Alignment:
Q  421 ttttatatcaaatttgatgtttatatatatttattagttaaa 462  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  21144669 ttttatatcaagtttgatgtttatatatatttattagttaaa 21144710  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 460
Target Start/End: Original strand, 53423277 - 53423309
Alignment:
Q  428 tcaaatttgatgtttatatatatttattagtta 460  Q
    |||||||||||||||||||||||||||||||||    
T  53423277 tcaaatttgatgtttatatatatttattagtta 53423309  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 510
Target Start/End: Complemental strand, 1543291 - 1543202
Alignment:
Q  421 ttttatatcaaatttgatgtttatatatatttattagttaaagcctaatttataggttcgctttagactatcaaaatctcaaaaacggcc 510  Q
    |||| |||||||||| |||||| |||||||||||||||||      || || |||||||||||||||| |||||||||||| ||||||||    
T  1543291 ttttttatcaaatttaatgtttttatatatttattagttaggattcaaattgtaggttcgctttagaccatcaaaatctcataaacggcc 1543202  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 460
Target Start/End: Original strand, 43790658 - 43790698
Alignment:
Q  420 tttttatatcaaatttgatgtttatatatatttattagtta 460  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  43790658 tttttgtatcaaatttgatgtttatatatatttattagtta 43790698  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 482
Target Start/End: Complemental strand, 24481396 - 24481334
Alignment:
Q  420 tttttatatcaaatttgatgtttatatatatttattagttaaagcctaatttataggttcgct 482  Q
    ||||| |||||| ||||||||||||||||||||| |||||| || |||| || ||||||||||    
T  24481396 tttttttatcaagtttgatgtttatatatatttactagttagagtctaaattgtaggttcgct 24481334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 9107150 - 9107110
Alignment:
Q  420 tttttatatcaaatttgatgtttatatatatttattagtta 460  Q
    ||||| |||| ||||||||||||||||||||||||||||||    
T  9107150 tttttgtatcgaatttgatgtttatatatatttattagtta 9107110  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 456
Target Start/End: Original strand, 2296681 - 2296717
Alignment:
Q  420 tttttatatcaaatttgatgtttatatatatttatta 456  Q
    |||||||||||||||||||||||||||||||||||||    
T  2296681 tttttatatcaaatttgatgtttatatatatttatta 2296717  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 9315485 - 9315445
Alignment:
Q  420 tttttatatcaaatttgatgtttatatatatttattagtta 460  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  9315485 tttttgtatcaaatttaatgtttatatatatttattagtta 9315445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 460
Target Start/End: Original strand, 32236988 - 32237024
Alignment:
Q  424 tatatcaaatttgatgtttatatatatttattagtta 460  Q
    |||||||| ||||||||||||||||||||||||||||    
T  32236988 tatatcaagtttgatgtttatatatatttattagtta 32237024  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 506
Target Start/End: Complemental strand, 5450716 - 5450636
Alignment:
Q  426 tatcaaatttgatgtttatatatatttattagttaaagcctaatttataggttcgctttagactatcaaaatctcaaaaac 506  Q
    |||||| ||||||||||||||||||||||||||||    | || |||||| |||||  ||||| |||||||||||| ||||    
T  5450716 tatcaagtttgatgtttatatatatttattagttatgatccaaattatagattcgcgatagaccatcaaaatctcataaac 5450636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 460
Target Start/End: Original strand, 6587114 - 6587154
Alignment:
Q  420 tttttatatcaaatttgatgtttatatatatttattagtta 460  Q
    ||||| |||||| ||||||||||||||| ||||||||||||    
T  6587114 tttttttatcaagtttgatgtttatatagatttattagtta 6587154  T

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