View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3577_high_21 (Length: 238)
Name: NF3577_high_21
Description: NF3577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3577_high_21 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 7299477 - 7299256
Alignment:
| Q |
17 |
agtaattacatccgaatgagtactaatgaagataatgtctggagttcaaattccgaaaacaaattaacataagccattgatatttatctatnnnnnnnta |
116 |
Q |
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| T |
7299477 |
agtaattacatccgaatgagtactaatgaagataatgtctgaagttcaaattccgaaaacaaattaacataagccattgacatttatctataaaaaaata |
7299378 |
T |
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| Q |
117 |
ctcttaaataatatgaacatttatgctataaagtaaacaaaaagatatagctatatttacgaaagttggtcagaaattttgaacttggattgagaaagat |
216 |
Q |
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| T |
7299377 |
ctcttaaataatatgaacatttatgctataaagtaaacaaaaagatatagctatatttacgaaagttggtcagaaattttgaacttggattgagaaagat |
7299278 |
T |
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| Q |
217 |
aaccaactttttctctgcttgt |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
7299277 |
aaccaactttttctctgcttgt |
7299256 |
T |
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