View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3577_high_22 (Length: 236)
Name: NF3577_high_22
Description: NF3577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3577_high_22 |
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| [»] scaffold0620 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 34087526 - 34087300
Alignment:
| Q |
1 |
caattgagattcgtccttgaaagtaacacttattctttttgctagattgaatagggtgcaagctggtaaggttatatgttgcgaagaaaaactgtaaggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34087526 |
caattgagattcgtccttgaaagtaacacttattatttttgctagattgaatagggtgcaagctggtaaggttatatgttgcgaagaaaaactgtaaggt |
34087427 |
T |
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| Q |
101 |
caatatttatctgaacatggtgtgaatgatgttagtgtggactagttcatttgcctaagtataataatgtgtgagtggattgggaggatatctcatgaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34087426 |
caatatttatctgaacatggtgtgaatgatgttagtgtggactagttcatttgcctaagtataataatgtgtgagtggattgggaggatatctcatgaat |
34087327 |
T |
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| Q |
201 |
aggattgcaataactagatatattctt |
227 |
Q |
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|||||||||||||||| |||| ||||| |
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| T |
34087326 |
aggattgcaataactatatattttctt |
34087300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0620 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0620
Description:
Target: scaffold0620; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 979 - 749
Alignment:
| Q |
1 |
caattgagattcgtccttgaaagtaacacttattctttttgctagattgaatagggtgcaagctggtaaggttatatgttgcgaagaaaaactgtaaggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
979 |
caattgagattcgtccttgaaagtaacacttattatttttgctagattgaatagggtgcaagctggtaaggttatatgttgcgaagaaaaactgtaaggt |
880 |
T |
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| Q |
101 |
caatatttatctgaacatggtgtgaatgatgttagtgtggactagttcatttgcctaagt----ataataatgtgtgagtggattgggaggatatctcat |
196 |
Q |
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| T |
879 |
caatatttatctgaacatggtgtgaatgatgttagtgtggactagttcatttgcctaagtataaataataatgtgtgagtggattgggaggatatctcat |
780 |
T |
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| Q |
197 |
gaataggattgcaataactagatatattctt |
227 |
Q |
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||||||||||||||||||||| ||| ||||| |
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| T |
779 |
gaataggattgcaataactaggtattttctt |
749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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