View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3577_high_3 (Length: 455)
Name: NF3577_high_3
Description: NF3577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3577_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 12 - 437
Target Start/End: Original strand, 4035313 - 4035738
Alignment:
| Q |
12 |
acagaggtgttaggaagcgaccatggggacgctacgccgctgagattcgcgatccgtggaagaaaacgcgtgtttggttgggtacatttgacactcctga |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4035313 |
acagaggtgttaggaagcgaccatggggacgctacgccgctgagattcgcgatccgtggaagaaaacgcgtgtttggctgggtacatttgacactcctga |
4035412 |
T |
|
| Q |
112 |
agaagctgctcttgcttacgacggcgccgctcgttctcttcgtggagctaaagcaaaaaccaacttcccaccggcgccggtcgccggaggactttgtttg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4035413 |
agaagctgctcttgcttacgacggcgccgctcgttctcttcgtggagctaaagcaaaaaccaacttcccaccggcgccggtcgccggaggactttgtttg |
4035512 |
T |
|
| Q |
212 |
gatctcaacgctccttcttctgatctccgatggccatctgtcccttcacgtggccgtgtgcttactgagtttcttcaaactggtgttctcaaggatttca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4035513 |
gatctcaacgctccttcttctgatctccgatggccatctgtcccttcacgtggccgtgtgcttactgagtttcttcaaactggtgttctcaaggatttca |
4035612 |
T |
|
| Q |
312 |
accctcctccacctccacccatcggcggggtggttggacagaggcataatgaagttactcttgctgtcgccggcagaactatggtggctgagaactctcc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4035613 |
accctcctccacctccacccatcggcggggtggttggacagaggcataatgaagttactcttgctgtcgccggcagaactatggtggctgagaactctcc |
4035712 |
T |
|
| Q |
412 |
gacggcggcttacttgggacttgttc |
437 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
4035713 |
gacggcggcttacttgggacttgttc |
4035738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 36722997 - 36722885
Alignment:
| Q |
17 |
ggtgttaggaagcgaccatggggacgctacgccgctgagattcgcgatccgtggaagaaaacgcgtgtttggttgggtacatttgacactcctgaagaag |
116 |
Q |
| |
|
||||| ||||||||||||||||| || | ||| ||||||||| | ||||| ||||||||| | || || |||||||| || ||||| || ||||||||| |
|
|
| T |
36722997 |
ggtgtaaggaagcgaccatggggtcgattcgctgctgagattagagatccctggaagaaagctcgagtctggttggggacctttgataccgctgaagaag |
36722898 |
T |
|
| Q |
117 |
ctgctcttgctta |
129 |
Q |
| |
|
|||| | |||||| |
|
|
| T |
36722897 |
ctgcacatgctta |
36722885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 36710131 - 36710061
Alignment:
| Q |
20 |
gttaggaagcgaccatggggacgctacgccgctgagattcgcgatccgtggaagaaaacgcgtgtttggtt |
90 |
Q |
| |
|
||||| |||||||||||||| || | ||| ||||||||| | ||||| ||||||||||| ||||| ||||| |
|
|
| T |
36710131 |
gttagaaagcgaccatggggtcgattcgctgctgagattagagatccctggaagaaaacccgtgtatggtt |
36710061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 30412956 - 30412837
Alignment:
| Q |
26 |
aagcgaccatggggacgctacgccgctgagattcgcgatccgtggaagaaaacgcgtgtttggttgggtacatttgacactcctgaagaagctgctcttg |
125 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||||||||| | ||||||| || || ||| | ||||| |||||||| | ||||||||||| | |
|
|
| T |
30412956 |
aagcgaccatggggccgttacgccgccgagattcgcgatcccggtaagaaaagccgcgtctggctaggtacctttgacaccgccgaagaagctgccagag |
30412857 |
T |
|
| Q |
126 |
cttacgacggcgccgctcgt |
145 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
30412856 |
cttacgacaacgccgctcgt |
30412837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University