View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3577_high_5 (Length: 418)
Name: NF3577_high_5
Description: NF3577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3577_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 215 - 399
Target Start/End: Complemental strand, 52138254 - 52138070
Alignment:
| Q |
215 |
atgtaacctcccattcttactactttaccataaaaactccaacaaacaacaaaccaaatgggtatgagtttgaagaaaacaaacatatgggtatgcttca |
314 |
Q |
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| T |
52138254 |
atgtaacctcccattcttactactgtaccataaaaactccaacaaacaacaaaccaaatgggtatgagtttgaagaaaacaaacatatgggtatgcttca |
52138155 |
T |
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| Q |
315 |
acgttactttaaattaccagaaaattaaatgatgaaaatggatatgacacttaatgatgtacattaaaccagccttgacatatgg |
399 |
Q |
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| T |
52138154 |
acattactttaaattaacagaaaattaaatgatgaaaatggatatgacacttaatgatgtacattaaaccagccttgacatatgg |
52138070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 52138459 - 52138363
Alignment:
| Q |
10 |
acatcatcaacggaacaaaaatccagctttttctatgatttttcacttcaatttaatttccctcactcccgcagatctaacatctccctgtgttcgt |
106 |
Q |
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| T |
52138459 |
acatcatcaacggaacaaaaatccagctttttctatgatttttcacttcaatttaatttcccttactcccgcagatctaacatctccctgtgttcgt |
52138363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 215 - 399
Target Start/End: Complemental strand, 9854348 - 9854170
Alignment:
| Q |
215 |
atgtaacctcccattcttactactttaccataaaaactccaacaaacaacaaaccaaatgggtatgagtttgaagaaaacaaacatatgggtatgcttca |
314 |
Q |
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| T |
9854348 |
atgtaacctcccattcttactattgtaccataaaaactccaacaaac-------caaatgggtctgagtttgaagaaaacaaacatatgggtatgcttca |
9854256 |
T |
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| Q |
315 |
acgttactttaaattaccagaaaattaaatgatgaaaatggat-atgacacttaatgatgtacattaaaccagccttgacatatgg |
399 |
Q |
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| T |
9854255 |
acgttactttaaattaccagaaaattaaatgatgaaaatggatcatgacacttaatgatgtacattaaaccagccttgacatatgg |
9854170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 9854553 - 9854457
Alignment:
| Q |
10 |
acatcatcaacggaacaaaaatccagctttttctatgatttttcacttcaatttaatttccctcactcccgcagatctaacatctccctgtgttcgt |
106 |
Q |
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| T |
9854553 |
acatcatcaacggaacaaaaatccagttgtttctatgatttttcacttcaatttaatttccctcactcccgcagatctaacatctccctgtgttcgt |
9854457 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 19709795 - 19709833
Alignment:
| Q |
50 |
tttcacttcaatttaatttccctcactcccgcagatcta |
88 |
Q |
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| T |
19709795 |
tttcacttcaatttaatttccctcactcccgcagatcta |
19709833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 18819566 - 18819645
Alignment:
| Q |
217 |
gtaacctc-ccattcttactactttaccataaaaactccaacaaacaacaaaccaaatgggtatgagtttgaagaaaaca |
295 |
Q |
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| T |
18819566 |
gtaacctcaccattcttagtactgcaccataaaacccccaacaaacagcaaacaaaagggatatgagtttgaagaaaaca |
18819645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 294
Target Start/End: Original strand, 44230728 - 44230807
Alignment:
| Q |
215 |
atgtaacctc-ccattcttactactttaccataaaaactccaacaaacaacaaaccaaatgggtatgagtttgaagaaaac |
294 |
Q |
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|||||||||| ||||||||| |||| ||||||||| | |||| ||||||||||| ||| || | |||||||||||||||| |
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| T |
44230728 |
atgtaacctcaccattcttagtactgcaccataaaacccccaa-aaacaacaaacaaaagggatctgagtttgaagaaaac |
44230807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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