View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3577_high_7 (Length: 410)
Name: NF3577_high_7
Description: NF3577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3577_high_7 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 40947569 - 40947957
Alignment:
| Q |
1 |
atgggaaaacctacttttgtgaagtcaacnnnnnnntcagcaaaatattatacacaaacataaaactacgtaaacatttcaacccaaactagctagggaa |
100 |
Q |
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| T |
40947569 |
atgggaaaacctacttgtgtgaagtcaacaaaaaaatcagcaaaatattatacacaaacataaaactacgtaaacatttcaacccaaactagctagggaa |
40947668 |
T |
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| Q |
101 |
gcattaatctactcttaaatatgaacataattnnnnnnnnnntgtcaattttgatatattgtgttttgaattcctaaagttagatgattaatttgagnnn |
200 |
Q |
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| T |
40947669 |
gcattaatctactcttaaatatgaacataatt--aaaaaaaatgtcaattttcatacattgtgttttgaattcctaaagttagatgattaatttgag-aa |
40947765 |
T |
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| Q |
201 |
nnnntaaataaatggtgaaatagaaactttgagttaaattagaagatctagggagtaatttagtaaaagagaaatataatggagtatgannnnnnnnatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
40947766 |
aaaataaataaatggtgaaatagaaactttgagttaaattagaagatctagggagtaatttagtaaaagagaaatataatagagtatg-gtttttttatc |
40947864 |
T |
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| Q |
301 |
ttctgaaattaaagtgcaagagaacttatttcatcatctttccaaatcccatcctcgtatctgaaccatctaggaagcccatcatctgctttt |
393 |
Q |
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| T |
40947865 |
ttctcaaattaaagtgcaagagaacttatttcatcatctttccaaatcccatcctcgtatctgaaccatctaggaagtccatcatctgctttt |
40947957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 381
Target Start/End: Original strand, 38401 - 38469
Alignment:
| Q |
313 |
agtgcaagagaacttatttcatcatctttccaaatcccatcctcgtatctgaaccatctaggaagccca |
381 |
Q |
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| T |
38401 |
agtgcaagagagctaacttcatcatgtttccaaatcccttcctcatacctaaaccacctaggaagccca |
38469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 386
Target Start/End: Complemental strand, 45656649 - 45656574
Alignment:
| Q |
311 |
aaagtgcaagagaacttatttcatcatctttccaaatcccatcctcgtatctgaaccatctaggaagcccatcatc |
386 |
Q |
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||||||||||||| || | |||||||| |||||||||||| ||||| || ||||||| ||| |||||||||||| |
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| T |
45656649 |
aaagtgcaagagagctaacttcatcatgtttccaaatcccttcctcatacttgaaccacctaacaagcccatcatc |
45656574 |
T |
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