View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3577_high_8 (Length: 402)
Name: NF3577_high_8
Description: NF3577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3577_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 6e-93; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 10180513 - 10180314
Alignment:
| Q |
10 |
gagcacagacctgagagagttagagagcaagatcaaactaggagaatgatagtgaattttaacaatgaccggtctttgattattattattaaaaattgaa |
109 |
Q |
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| T |
10180513 |
gagcacagacatgagagagttagagagcaagatcaaactaggagaatgatagtgaatttgaacaatgaccggtctttgattattattattaaaaattgaa |
10180414 |
T |
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| Q |
110 |
acgatggtgcatagaagagagtattgaaagtacattcatgatgactcatgatatgaaattaaataaaaataaaaggttatttataaccattgaaccacac |
209 |
Q |
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| T |
10180413 |
acgatggtgcatagaagagagtattgaatgtacattc---atgacttatgatatgaaattaaataaaaataaaaggttatttataaccattgaaccacac |
10180317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 208 - 383
Target Start/End: Complemental strand, 10180271 - 10180096
Alignment:
| Q |
208 |
acatagatactacgtgttttccgccaaacattgtattttgattggtacttaatttttaatcgtgacgtgtttttacacatggcagatttttattatatca |
307 |
Q |
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| T |
10180271 |
acatagatactacgtgttttccaccaaacattgtattttgattggtacttagtttttaatcatgacgcgtttttacacatggcaggtttttattgtatca |
10180172 |
T |
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| Q |
308 |
taactgagaaacttgtgtgtattctgccaaacattgaagtttgattagtgagtttttaatcatgacgcgttcttac |
383 |
Q |
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| T |
10180171 |
taactgagaaacttgtgtgtattctgccaaacattgaagtttgattggtgagtttttaatcatgatgcgttcttac |
10180096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 10341626 - 10341456
Alignment:
| Q |
211 |
tagatactacgtgttttccgccaaacattgtattttgattggtacttaatttttaatcgtgacgtgtttttacacatggcagatttttattatatcataa |
310 |
Q |
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| T |
10341626 |
tagatactacgtattttccgccaaacattgtattttgattggtactgagtttttaatcatgacgcgttcttacacatggcaagttttgattgtatcatta |
10341527 |
T |
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| Q |
311 |
ctgagaaacttgtgtgtattctgccaaacattgaagtttgattagtgagtttttaatcatgacgcgttctt |
381 |
Q |
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| T |
10341526 |
ctttgaaacttgcgtgtattctgctaaacatttaagctggattggcaagtttttaatcatgacgcgttctt |
10341456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 208 - 379
Target Start/End: Complemental strand, 10352573 - 10352400
Alignment:
| Q |
208 |
acatagatactacgtgttttccgccaaacattgtattttgattggtacttaatttttaatcgtgacgtgtttttacacatggcagatttttattatatca |
307 |
Q |
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| T |
10352573 |
acatagttactacgtgttttctgccaaacattgtattttgattggtactgactttttaatcatgacgcgttaatacacatggcaggttttgattgtatca |
10352474 |
T |
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| Q |
308 |
ta--actgagaaacttgtgtgtattctgccaaacattgaagtttgattagtgagtttttaatcatgacgcgttc |
379 |
Q |
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|| ||| ||||||||| ||||||||| ||||||| |||||||||| |||||||||||||| ||||| |||| |
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| T |
10352473 |
tattacttagaaacttgctcgtattctgcaaaacattaaagtttgattggtgagtttttaatcgtgacgtgttc |
10352400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 10352806 - 10352617
Alignment:
| Q |
21 |
tgagagagttagagagcaagatcaaactaggagaatgatagtgaattttaacaatgaccggtctttgattattatt---attaaaaattgaaacgatggt |
117 |
Q |
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||||||| ||||||||||||| ||| ||||||||||| ||||||||| |||||||| |||||||||||||||||| |||| | ||||||| ||| | |
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| T |
10352806 |
tgagagatctagagagcaagatgaaagtaggagaatgaaagtgaatttgaacaatgatcggtctttgattattattattattatagattgaaatgataat |
10352707 |
T |
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| Q |
118 |
gcatagaagagagtattgaaagtacattcatgatgactcatgatatgaaattaaataaaaataaaaggttatttataaccattgaaccacaca |
210 |
Q |
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| T |
10352706 |
gcatataagagagtgttgaatgtacattc---ctaactcatgatatgaaattaaataacagtaagaggttatttataactatcaaaccacaca |
10352617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 10341861 - 10341691
Alignment:
| Q |
23 |
agagagttagagagcaagatcaaactaggagaatgatagtgaattttaacaatgaccggtctttgattattattattaaaaattgaaacgatggtgcata |
122 |
Q |
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|||||| |||||||||| | || ||||||||||| ||||||||| |||||||| || |||| |||||||||||||| | ||||||| ||| ||| | | |
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| T |
10341861 |
agagagctagagagcaatacgcaagtaggagaatgaaagtgaatttgaacaatgatcgatcttcgattattattattatagattgaaatgatagtgaaaa |
10341762 |
T |
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| Q |
123 |
gaagagagtattgaaagtacattcatgatgactcatgatatgaaattaaataaaaataaaaggttatttataac |
196 |
Q |
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| T |
10341761 |
gaagagagtgttgaatgtacattc---gtgcctcatgatatgaaattaaataaaagtaaaaggttctttataac |
10341691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 211 - 383
Target Start/End: Complemental strand, 10356115 - 10355945
Alignment:
| Q |
211 |
tagatactacgtgttttccgccaaacattgtattttgattggtacttaatttttaatcgtgacgtgtttttacacatggcagatttttatt--atatcat |
308 |
Q |
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|||||||||| | ||||| |||||||||||||||| || ||||||| |||||||||| |||| ||||||||| |||||||| ||| ||||||| |
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| T |
10356115 |
tagatactacatattttctgccaaacattgtatttcgactggtactacatttttaatcatgacac----ttacacatgacagattttgattgtatatcat |
10356020 |
T |
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| Q |
309 |
aactgagaaacttgtgtgtattctgccaaacattgaagtttgattagtgagtttttaatcatgacgcgttcttac |
383 |
Q |
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| | | ||||||| |||||| ||| |||||||||||||||||| ||||||||||||| |||||| |||||||| |
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| T |
10356019 |
tagttaaaaacttgcatgtattatgcaaaacattgaagtttgattggtgagtttttaatgatgacgtgttcttac |
10355945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 368
Target Start/End: Complemental strand, 10352218 - 10352111
Alignment:
| Q |
261 |
ttttaatcgtgacgtgtttttacacatggcagatttttattatatcataactgagaaacttgtgtgtattctgccaaacattgaagtttgattagtgagt |
360 |
Q |
| |
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||||||||| ||||||| |||||| || | |||| ||| |||||| | | |||||||| |||||||||| ||||| |||| | ||||||| |||||| |
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| T |
10352218 |
ttttaatcgcaacgtgttcttacacgtgctatgttttgattgtatcattaattagaaacttatgtgtattctaccaaatattgtattttgattggtgagt |
10352119 |
T |
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| Q |
361 |
ttttaatc |
368 |
Q |
| |
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|||||||| |
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| T |
10352118 |
ttttaatc |
10352111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 32 - 196
Target Start/End: Complemental strand, 10356444 - 10356275
Alignment:
| Q |
32 |
gagagcaagatcaaactaggagaatgatagtgaattttaacaatgaccggtctttgattatt---attattaaaaattgaaacgatggtgcatagaagag |
128 |
Q |
| |
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||||||||||| ||| ||||||||||| | ||||||| |||||||| | ||| |||||||| ||||||| | ||| ||| ||| ||||||||| ||| |
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| T |
10356444 |
gagagcaagatgaaaataggagaatgaaaatgaatttgaacaatgatcaatctctgattattatgattattatagatttaaatgatagtgcatagaggag |
10356345 |
T |
|
| Q |
129 |
agta------ttgaaagtacattcatgatgactcatgatatgaaattaaataaaaataaaaggttatttataac |
196 |
Q |
| |
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|||| ||||| ||||||| |||| |||||||||||||||||||||| |||| | |||||||||| |
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| T |
10356344 |
agtaagagtgttgaatgtacatt----gtgacccatgatatgaaattaaataaaagaaaaatgatatttataac |
10356275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 10335307 - 10335229
Alignment:
| Q |
264 |
taatcgtgacgtgtttttacacatggcagatttttattatatcataactgagaaacttgtgtgtattctgccaaacatt |
342 |
Q |
| |
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||||||||||||||| ||||||||||| |||| ||| |||||| ||| | ||||||| ||||||| |||||||||| |
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| T |
10335307 |
taatcgtgacgtgttcctacacatggcatgttttgattgtatcattacttacaaacttgcgtgtatttcgccaaacatt |
10335229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 342
Target Start/End: Complemental strand, 10352145 - 10352037
Alignment:
| Q |
231 |
ccaaacattgtattttgattggtacttaatttttaatcgtgacgtgtttttacacatggcagatttttattatatcataactgagaaacttgtgtgtatt |
330 |
Q |
| |
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||||| ||||||||||||||||| | ||||||||||||| ||||| |||||||| | |||| ||| ||||| ||| ||||||||| ||||||| |
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| T |
10352145 |
ccaaatattgtattttgattggtg---agtttttaatcgtgatgtgttcctacacatgtgatgttttgattgtatcactacttagaaacttgcgtgtatt |
10352049 |
T |
|
| Q |
331 |
ctgccaaacatt |
342 |
Q |
| |
|
| |||||||||| |
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| T |
10352048 |
ccgccaaacatt |
10352037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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