View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3577_low_11 (Length: 382)

Name: NF3577_low_11
Description: NF3577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3577_low_11
NF3577_low_11
[»] chr2 (24 HSPs)
chr2 (1-378)||(39214930-39215307)
chr2 (116-369)||(39602005-39602258)
chr2 (116-371)||(39450511-39450766)
chr2 (110-371)||(39458221-39458482)
chr2 (124-371)||(39382026-39382273)
chr2 (112-269)||(39152012-39152169)
chr2 (124-369)||(39199295-39199540)
chr2 (116-295)||(39220250-39220429)
chr2 (112-370)||(39487992-39488249)
chr2 (112-371)||(39474078-39474337)
chr2 (118-370)||(39136294-39136546)
chr2 (112-371)||(39416170-39416432)
chr2 (145-269)||(39495377-39495501)
chr2 (145-269)||(39123636-39123760)
chr2 (112-367)||(39422290-39422545)
chr2 (116-193)||(44896171-44896248)
chr2 (124-212)||(39427504-39427592)
chr2 (14-65)||(39369737-39369788)
chr2 (317-371)||(39129495-39129549)
chr2 (18-123)||(39161458-39161563)
chr2 (18-123)||(39207631-39207736)
chr2 (310-371)||(39399012-39399073)
chr2 (321-369)||(27154993-27155041)
chr2 (319-371)||(39391674-39391726)
[»] chr7 (1 HSPs)
chr7 (118-370)||(19806655-19806907)
[»] chr5 (1 HSPs)
chr5 (110-368)||(17058856-17059114)


Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 39215307 - 39214930
Alignment:
Q  1 aaattccttctcctgtccttcaagctgtttctctcttgactccaaatcctttactcgtccttcaaggtgtttctcgcgtgactcaagctccttcacccgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215307 aaattccttctcctgtccttcaagctgtttctctcttgactccaaatcctttactcgtccttcaaggtgtttctcgcgtgactcaagctccttcacccgt 39215208  T
Q  101 tttttatattgcttctcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtcca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215207 tttttatattgcttctcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtcca 39215108  T
Q  201 tcaaatagagcttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaact 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39215107 tcaaatagagcttcccttccttcactacaaaatccttaatacattcttcaatttttccctgcattttctcatgagcctcgtcaattcttctaacacaact 39215008  T
Q  301 gacctgtgtcttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctctgctcctc 378  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  39215007 gacctgtgtcttcttattttcaagctctttacagcactcctcaacatatctctttatggactgcaatctcttctcctc 39214930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 116 - 369
Target Start/End: Complemental strand, 39602258 - 39602005
Alignment:
Q  116 tcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcc 215  Q
    |||||||||||||| || ||||||||||||||||| ||||| || || ||||||||| |||||||||||||||||||||| ||||| |||||||| | ||    
T  39602258 tcttttgaaatgttgcccttgacttgattaagttccatctccttcgttttgagctctagcttgcgctctccaatcaagtcatccatgaaatagagttgcc 39602159  T
Q  216 cttccttcactacaaaatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtcttctt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  ||||| ||||| |||||| |  |   | |||||    
T  39602158 cttccttcactacaaaatccttaatacattcttcaatttttccctgcattttctcatgagcttcgaaaattcctctaaaacaactaatttcctttttctt 39602059  T
Q  316 gttttcaagctctttacagcactcatcaacatatctctttatggactgcaatct 369  Q
     |||||||||||||| | |||||| | || || | |||||||||||||||||||    
T  39602058 attttcaagctctttgcggcactcctgaatatctatctttatggactgcaatct 39602005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 116 - 371
Target Start/End: Complemental strand, 39450766 - 39450511
Alignment:
Q  116 tcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcc 215  Q
    |||||||||||||| || |||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||  |||||||||||||||| ||    
T  39450766 tcttttgaaatgttccccttgacttgattaagttctatctctttcgccttgagctctagcttgcgctctccaatcaagttttccatcaaatagagctgcc 39450667  T
Q  216 cttccttcactacaaaatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtcttctt 315  Q
    ||||||| || ||||| | ||| ||||| || ||||||| | | |||| ||| ||| || | || |||||||||||||||||||| || ||  | |||||    
T  39450666 cttcctttaccacaaactgcttgatacaatcgtcaatttcttcctgcactttgtcacgaacttcatcaattcttctaacacaactaacttgctttttctt 39450567  T
Q  316 gttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctct 371  Q
     |||| ||||||||| ||||| || |||| || | |||| ||||||||||||||||    
T  39450566 attttgaagctctttgcagcagtcctcaatatctgtcttgatggactgcaatctct 39450511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 110 - 371
Target Start/End: Complemental strand, 39458482 - 39458221
Alignment:
Q  110 tgcttctcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaataga 209  Q
    ||||||| ||||||||||||| | |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  39458482 tgcttctgttttgaaatgttatccttgacttgatgaagttctatctcttttgtcttgagttcttgcttgcgctctccaatcaagtcttccatcaaataga 39458383  T
Q  210 gcttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgt 309  Q
    | |   |||||||  || |||||||||  | ||||| |||||||||  | |  |||||||   |||| ||||||||||||| |||| || |    |   |    
T  39458382 gttgtgcttcctttgctgcaaaatcctcgacacatttttcaattttggcctcgattttcttgcgagcttcgtcaattcttccaacataaatagtttcctt 39458283  T
Q  310 cttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctct 371  Q
     |||||||||||||| ||||| |||||||| |||| || |||||||||||||||||||||||    
T  39458282 tttcttgttttcaagatctttgcagcactcctcaatatctctctttatggactgcaatctct 39458221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 124 - 371
Target Start/End: Original strand, 39382026 - 39382273
Alignment:
Q  124 aatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttc 223  Q
    ||||||| || |||||||||||||||| | |||||||| |||||||||| |||||||||||||||||| ||  ||||||||||||||||   ||||||||    
T  39382026 aatgttatcaatgacttgattaagttccacctcttttgccttgagctctagcttgcgctctccaatcatgttttccatcaaatagagctgatcttccttc 39382125  T
Q  224 actacaaaatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtcttcttgttttcaa 323  Q
    |||||||| ||||| |||||||||||| ||||| | |||| ||| |||  | | |  |||||||||||||||  ||| || ||  ||||||| |||| ||    
T  39382126 actacaaactccttgatacattcttcagttttttcctgcactttgtcacaaacttgatcaattcttctaacaacactaacttggttcttcttattttgaa 39382225  T
Q  324 gctctttacagcactcatcaacatatctctttatggactgcaatctct 371  Q
    ||||||| |||||||| |||  || ||||||||||||||| |||||||    
T  39382226 gctctttgcagcactcttcagtatctctctttatggactgtaatctct 39382273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 112 - 269
Target Start/End: Complemental strand, 39152169 - 39152012
Alignment:
Q  112 cttctcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagc 211  Q
    ||||| ||||||||||||| |  |||||| |  |||||| | ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  39152169 cttctgttttgaaatgttatccatgacttcacgaagttccaactcttttgtcttgagttcttgcttgcgctctccaatcaagtcctccatcaaatagagc 39152070  T
Q  212 ttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttct 269  Q
    | |||||||||  ||||||||||||| | |||||| |||||||| || ||||||||||    
T  39152069 tgcccttcctttgctacaaaatccttgacacattcatcaattttcccctgcattttct 39152012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 124 - 369
Target Start/End: Original strand, 39199295 - 39199540
Alignment:
Q  124 aatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttc 223  Q
    ||||||| || |||||||||||||||||||||||||  ||||||||||| ||||||| |||||||||||||  |||| |||| |||| | ||||| |||     
T  39199295 aatgttatcaatgacttgattaagttctatctctttcatcttgagctctagcttgcgttctccaatcaagttttccaacaaaaagagttgccctttcttt 39199394  T
Q  224 actacaaaatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtcttcttgttttcaa 323  Q
    |||||||| || || ||||| || ||||||||| | |||| || ||   |||| || |||||||||||||||  ||| || ||  ||||||| |||| ||    
T  39199395 actacaaactcattgatacaatcatcaattttttcctgcacttccttgcgagcttcatcaattcttctaacaacactaacttggttcttcttattttgaa 39199494  T
Q  324 gctctttacagcactcatcaacatatctctttatggactgcaatct 369  Q
    ||||||| |||||||| |||  || |||||||||||||||||||||    
T  39199495 gctctttgcagcactcttcagtatctctctttatggactgcaatct 39199540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 116 - 295
Target Start/End: Complemental strand, 39220429 - 39220250
Alignment:
Q  116 tcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcc 215  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||  |||||| ||||  ||||||||  |||||||||||||||| |     
T  39220429 tcttttgaaatgttacccttgacttgatcaagttctatctcttttgccttgagctcaagcttgctctctttaatcaagttttccatcaaatagagctcct 39220330  T
Q  216 cttccttcactacaaaatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaaca 295  Q
    |||| ||||||||||| ||||| ||||| || ||||||||| | |||| ||||||   ||| || |||||||||||||||    
T  39220329 cttctttcactacaaactccttgatacaatcgtcaattttttcctgcactttctcgcaagcatcatcaattcttctaaca 39220250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 112 - 370
Target Start/End: Original strand, 39487992 - 39488249
Alignment:
Q  112 cttctcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagc 211  Q
    ||||| ||||||||||||| |  |||||| |  ||||||  |||||||||| | ||| ||||||||| || ||||||||||||| ||||||||||| |||    
T  39487992 cttctgttttgaaatgttatccatgacttcacgaagttccgtctcttttgtatcgagttcttgcttgtgc-ctccaatcaagtcctccatcaaatatagc 39488090  T
Q  212 ttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtct 311  Q
    |  ||||||||  |||||||||| || | ||||||||||||||| || ||||||||||  ||| | |||| |||||||| ||||||||| |  |   | |    
T  39488091 tgtccttcctttgctacaaaatctttgacacattcttcaattttcccctgcattttctagtgaacttcgttaattcttccaacacaactaatttcctttt 39488190  T
Q  312 tcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctc 370  Q
    |||| ||||||||||||||| ||||||| ||||||| ||||||||| ||||||| ||||    
T  39488191 tcttattttcaagctctttagagcactcctcaacatctctctttatagactgcagtctc 39488249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 112 - 371
Target Start/End: Original strand, 39474078 - 39474337
Alignment:
Q  112 cttctcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagc 211  Q
    ||||| ||||||||||||| |  ||||||||  |||||| || |||||||| ||||| |||||||||||||||  |||||| || |||| ||||||||||    
T  39474078 cttctgttttgaaatgttatccatgacttgacaaagttccatatcttttgtgttgagttcttgcttgcgctcttgaatcaattcctccaccaaatagagc 39474177  T
Q  212 ttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtct 311  Q
    |  || |||||  ||||||||||||| | |||||||||||||||||| ||||||||||  ||||| ||||  ||||||| ||||  ||| |  |   | |    
T  39474178 tgtccatcctttgctacaaaatccttgacacattcttcaatttttccctgcattttcttgtgagcttcgttcattcttccaacatgactaattttctttt 39474277  T
Q  312 tcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctct 371  Q
    |||| |||||||||||||   ||||||| |||| || |||||||||||| ||||||||||    
T  39474278 tcttattttcaagctcttcggagcactcctcaatatctctctttatggaatgcaatctct 39474337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 118 - 370
Target Start/End: Complemental strand, 39136546 - 39136294
Alignment:
Q  118 ttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttccct 217  Q
    ||||||||||||| |  ||||||||  |||||| | |||||||||||| || |||| |||| |||||||||||||||| |||||||||  ||||| ||||    
T  39136546 ttttgaaatgttatccatgacttgacgaagttccaactcttttgtctttagttctttcttgtgctctccaatcaagtcctccatcaaaccgagctgccct 39136447  T
Q  218 tccttcactacaaaatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtcttcttgt 317  Q
    |||||  ||||||||||||| | |||||| ||||||||||| ||||||||||   |||| |||  |||||||| ||||   || |  |   | ||||| |    
T  39136446 tcctttgctacaaaatccttgacacattcgtcaatttttccctgcattttcttgcgagcttcgataattcttccaacatccctaatttcctttttcttat 39136347  T
Q  318 tttcaagctctttacagcactcatcaacatatctctttatggactgcaatctc 370  Q
    ||||||| ||||  |||||||| |||| || ||||||||||||||||||||||    
T  39136346 tttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctc 39136294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 112 - 371
Target Start/End: Original strand, 39416170 - 39416432
Alignment:
Q  112 cttctcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagc 211  Q
    ||||| ||||||||||||| |  ||| ||||  |||||| | ||||||||||||||| |||||||||||||| | |||||| || |||| ||||||||||    
T  39416170 cttctgttttgaaatgttatcggtgatttgacgaagttccaactcttttgtcttgagttcttgcttgcgctcccgaatcaattcctccaccaaatagagc 39416269  T
Q  212 ttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttctcatgag---cctcgtcaattcttctaacacaactgacctgtg 308  Q
    |  ||||||||  ||||||||||||| | |||||||||| ||||| | ||||||||||  ||||   | |||| |||||||| |||| |||| |  |       
T  39416270 tgtccttcctttgctacaaaatccttgacacattcttcagtttttacctgcattttcttgtgagcttcttcgttaattcttccaacataactaatttcct 39416369  T
Q  309 tcttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctct 371  Q
    | | ||| |||||||| ||| | |||||||| |||| || |||||||||||| ||||||||||    
T  39416370 tttgcttattttcaagttctctgcagcactcctcaatatctctctttatggaatgcaatctct 39416432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 145 - 269
Target Start/End: Original strand, 39495377 - 39495501
Alignment:
Q  145 aagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttcactacaaaatccttaatacat 244  Q
    ||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||   ||| |||  || |||||||||| |  |||    
T  39495377 aagttctgtttcttttgtcttgagttcttgcttgcgctctccaatcaagtcatccatcaaacagagctgtgcttgctttgctgcaaaatccttgacgcat 39495476  T
Q  245 tcttcaatttttccttgcattttct 269  Q
    |||||||||||| | ||||||||||    
T  39495477 tcttcaattttttcctgcattttct 39495501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 269
Target Start/End: Complemental strand, 39123760 - 39123636
Alignment:
Q  145 aagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttcccttccttcactacaaaatccttaatacat 244  Q
    ||||||| | ||||||||||| || |||| ||||||||||||||||| ||||||||||||| |||| |   ||| ||| || | ||||||||| | | ||    
T  39123760 aagttctgtttcttttgtcttcagttctttcttgcgctctccaatcatgtcgtccatcaaagagagttgtgcttgctttacaagaaaatccttgacaaat 39123661  T
Q  245 tcttcaatttttccttgcattttct 269  Q
    |||||| ||||||| ||||||||||    
T  39123660 tcttcagtttttccctgcattttct 39123636  T

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Target: chr2; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 112 - 367
Target Start/End: Original strand, 39422290 - 39422545
Alignment:
Q  112 cttctcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagc 211  Q
    ||||| ||||||||||| | |  |||||| |  |||||| | || |||||| ||||| |||||||||||||||||||||||||  ||||||||| |||||    
T  39422290 cttctgttttgaaatgtcatccatgactttacgaagttccagcttttttgtgttgagttcttgcttgcgctctccaatcaagttttccatcaaagagagc 39422389  T
Q  212 ttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtct 311  Q
    |    ||||||  |||| || ||||  | ||||||||||||||| || ||||||||||  |  || || | |||||||| ||||  ||| |  |   | |    
T  39422390 tgtgattcctttgctacgaattcctcgacacattcttcaattttcccctgcattttcttgtatgcttccttaattcttccaacatcactaatttcctttt 39422489  T
Q  312 tcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaat 367  Q
    |||| ||||| |||||||| |||||||  |||| || |||||||||||||||||||    
T  39422490 tcttattttccagctctttgcagcacttctcaatatctctctttatggactgcaat 39422545  T

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Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 44896171 - 44896248
Alignment:
Q  116 tcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaag 193  Q
    ||||| ||||||||||| || |||||||||||||||||||||||   |  |||||||| |||||||||||||||||||    
T  44896171 tctttagaaatgttaccctttacttgattaagttctatctctttcaccgcgagctctttcttgcgctctccaatcaag 44896248  T

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Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 39427504 - 39427592
Alignment:
Q  124 aatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagct 212  Q
    ||||||| | |||||||||  ||||||| | ||||||||  |||| || ||||||||||||||||||||||| | ||||||| ||||||    
T  39427504 aatgttatccttgacttgacgaagttctgtttcttttgttctgagttcctgcttgcgctctccaatcaagtcattcatcaaacagagct 39427592  T

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Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 39369788 - 39369737
Alignment:
Q  14 tgtccttcaagctgtttctctcttgactccaaatcctttactcgtccttcaa 65  Q
    |||||||||||| | ||||||||||| ||||| |||||||||||||||||||    
T  39369788 tgtccttcaagcagcttctctcttgattccaactcctttactcgtccttcaa 39369737  T

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Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 371
Target Start/End: Complemental strand, 39129549 - 39129495
Alignment:
Q  317 ttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctct 371  Q
    ||||||||||||||  ||||||| |||| || |||||||||||||||||||||||    
T  39129549 ttttcaagctctttggagcactcctcaatatctctctttatggactgcaatctct 39129495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 39161563 - 39161458
Alignment:
Q  18 cttcaagctgtttctctcttgactccaaatcctttactcgtccttcaaggtgtttctcgcgtgactcaagctccttcacccgttttttatattgcttctc 117  Q
    |||||||||| ||||||||||||||||  ||| |||| ||| | |||| ||| |||||   ||||| |||||||| ||| |||  || ||| ||||||||    
T  39161563 cttcaagctgcttctctcttgactccagctccgttacccgttcctcaaagtgcttctcctttgactgaagctcctccactcgtccttcatactgcttctc 39161464  T
Q  118 ttttga 123  Q
    ||||||    
T  39161463 ttttga 39161458  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 39207631 - 39207736
Alignment:
Q  18 cttcaagctgtttctctcttgactccaaatcctttactcgtccttcaaggtgtttctcgcgtgactcaagctccttcacccgttttttatattgcttctc 117  Q
    |||||||||| ||||||||||||||||  ||| |||| ||| | |||| ||| |||||   ||||| |||||||| ||| |||  || ||| ||||||||    
T  39207631 cttcaagctgcttctctcttgactccagctccgttacccgttcctcaaagtgcttctcctttgactgaagctcctccactcgtccttcatactgcttctc 39207730  T
Q  118 ttttga 123  Q
    ||||||    
T  39207731 ttttga 39207736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 371
Target Start/End: Original strand, 39399012 - 39399073
Alignment:
Q  310 cttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctct 371  Q
    |||||| ||| |||| ||||| ||||| || |||| || |||||||||||||||||||||||    
T  39399012 cttcttttttccaagttctttccagcagtcttcaatatctctctttatggactgcaatctct 39399073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 369
Target Start/End: Original strand, 27154993 - 27155041
Alignment:
Q  321 caagctctttacagcactcatcaacatatctctttatggactgcaatct 369  Q
    ||||||||||  ||||||| |||| || |||||||||||||||||||||    
T  27154993 caagctctttggagcactcctcaatatctctctttatggactgcaatct 27155041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 39391674 - 39391726
Alignment:
Q  319 ttcaagctctttacagcactcatcaacatatctctttatggactgcaatctct 371  Q
    |||||||||||| |||||||| |||| || | ||||||||||| |||||||||    
T  39391674 ttcaagctctttgcagcactcttcaatatctttctttatggacagcaatctct 39391726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 118 - 370
Target Start/End: Complemental strand, 19806907 - 19806655
Alignment:
Q  118 ttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaatagagcttccct 217  Q
    ||||||||||||| |  ||||||||| |||||| | |||||||||||| || |||| ||||||||||||||||||||| |||||||||  ||||| ||||    
T  19806907 ttttgaaatgttatccatgacttgatgaagttccaactcttttgtctttagttctttcttgcgctctccaatcaagtcctccatcaaacggagctgccct 19806808  T
Q  218 tccttcactacaaaatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgtcttcttgt 317  Q
    |||||  ||||||||||||| | |||||  | | |||  || ||||||||||   |||| | || |||||| | |||| |||| |  |   | ||||| |    
T  19806807 tcctttgctacaaaatccttgacacatttgttagtttccccctgcattttcttgcgagctttgttaattctcccaacataactaatttcctttttcttat 19806708  T
Q  318 tttcaagctctttacagcactcatcaacatatctctttatggactgcaatctc 370  Q
    ||||||| ||||  ||||| || |||| || ||||||||||||||||||||||    
T  19806707 tttcaagatcttcgcagcaatcctcaatatctctctttatggactgcaatctc 19806655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 110 - 368
Target Start/End: Complemental strand, 17059114 - 17058856
Alignment:
Q  110 tgcttctcttttgaaatgttaccattgacttgattaagttctatctcttttgtcttgagctcttgcttgcgctctccaatcaagtcgtccatcaaataga 209  Q
    ||||||| ||||||||||||| |  ||||||||  ||||||| |||||||||||  ||| |||||||||||||||||||||||||| ||||| | | |||    
T  17059114 tgcttctgttttgaaatgttatccatgacttgacgaagttctctctcttttgtcacgagttcttgcttgcgctctccaatcaagtcctccatgagagaga 17059015  T
Q  210 gcttcccttccttcactacaaaatccttaatacattcttcaatttttccttgcattttctcatgagcctcgtcaattcttctaacacaactgacctgtgt 309  Q
    | |||||||||||  ||| ||| |||||   |  ||||| || |||| |  |||||||||  |||   |||| |||||| | ||||||||| || |||||    
T  17059014 gtttcccttcctttgctaaaaattccttgtgaatttctttaactttttccagcattttctggtgaatttcgttaattctacgaacacaactaacttgtgt 17058915  T
Q  310 cttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatc 368  Q
    ||| || |||| |||||| |   |||||| ||||| || ||||||||| ||||||||||    
T  17058914 ctttttatttttaagctcatagtagcacttatcaatatctctctttatagactgcaatc 17058856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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