View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3577_low_13 (Length: 310)
Name: NF3577_low_13
Description: NF3577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3577_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 48 - 210
Target Start/End: Complemental strand, 24618580 - 24618418
Alignment:
| Q |
48 |
taactatgcaataatttccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccact |
147 |
Q |
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| T |
24618580 |
taactatgcaataatttccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccact |
24618481 |
T |
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| Q |
148 |
tccctgtcaattttttcctgcaagacctgatcaatctcatcattaaactcaaccacaggatca |
210 |
Q |
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| T |
24618480 |
tccctgtcaattttttcctgcaagacctgatcaatctcatcattaaactcaaccacaggatca |
24618418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 5e-56; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 52 - 210
Target Start/End: Complemental strand, 1344188 - 1344030
Alignment:
| Q |
52 |
tatgcaataatttccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccc |
151 |
Q |
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| T |
1344188 |
tatgcaataatttccctgtgattgccagcatctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccc |
1344089 |
T |
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| Q |
152 |
tgtcaattttttcctgcaagacctgatcaatctcatcattaaactcaaccacaggatca |
210 |
Q |
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| T |
1344088 |
tgtcaattctttcctgtaaggcctgatcaatctcatcatcaaactcaaccacaagatca |
1344030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 52 - 210
Target Start/End: Original strand, 1355399 - 1355557
Alignment:
| Q |
52 |
tatgcaataatttccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccc |
151 |
Q |
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| T |
1355399 |
tatgcaataatttccctgtgattgccagcatctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccc |
1355498 |
T |
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| Q |
152 |
tgtcaattttttcctgcaagacctgatcaatctcatcattaaactcaaccacaggatca |
210 |
Q |
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| T |
1355499 |
tgtcaattctttcctgtaaggcctgatcaatctcatcatcaaactcaaccacaagatca |
1355557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 207
Target Start/End: Complemental strand, 1361261 - 1361143
Alignment:
| Q |
83 |
ctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtcaattttttcctgcaagacctgatcaat |
182 |
Q |
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| T |
1361261 |
ctctaagaatttcttttattctctcttcgcgagtacaatttaatctgcgcgcaaattcttccacttctttgtcagtcatt------aagtcatgatcaat |
1361168 |
T |
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| Q |
183 |
ctcatcattaaactcaaccacagga |
207 |
Q |
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| T |
1361167 |
ctcatcatcaaactcaaccacagga |
1361143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 1350687 - 1350615
Alignment:
| Q |
83 |
ctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtc |
155 |
Q |
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| T |
1350687 |
ctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtc |
1350615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 1365119 - 1365043
Alignment:
| Q |
49 |
aactatgcaataatttccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaa |
125 |
Q |
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| T |
1365119 |
aactatgcaacaatttccttgtgattgccaacatatgtaataatttcttttattctctcttccaaagaacaatttaa |
1365043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 43364468 - 43364537
Alignment:
| Q |
121 |
tttaatctgcgtgcaaattcttccacttccctgtcaattttttcctgcaagacctgatcaatctcatcat |
190 |
Q |
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| T |
43364468 |
tttaatctgcgggcaaattcttccacttccctatcaattcttgcttgtaaggccggatcaatctcatcat |
43364537 |
T |
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