View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3577_low_14 (Length: 292)
Name: NF3577_low_14
Description: NF3577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3577_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 9 - 276
Target Start/End: Original strand, 44146659 - 44146927
Alignment:
| Q |
9 |
agcacagaaatacaatttcaagt-catatgaaatctcttactcacccgccactacaccacaggtactaaatgttttgccaaagcatttcctgacagaaag |
107 |
Q |
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| T |
44146659 |
agcacagaaatacaatttcaagtgcatatgaaatctcttactcacccgccactacaccacaggtactaaatgttttgccaaagcatttcccgacagaaag |
44146758 |
T |
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| Q |
108 |
agaagaacgtgctatctacacttgatttccagcttcaacaatgacatgagactccctgattccacatttgtttctcttccccaattacactaatttatac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44146759 |
agaagaacgtgctatctacacttgatttccagcttcaacaatgacatgagactccctgattccacatttgtttctcttccccaattacactaatttatac |
44146858 |
T |
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| Q |
208 |
accaaaaacgatccagtatcaacataactacaggctaatgccttcccagctgaggttggcagagaaaat |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44146859 |
accaaaaacgatccagtatcaacataactacaggctaatgccttcccagctgaggttggcagagaaaat |
44146927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 44109145 - 44109260
Alignment:
| Q |
16 |
aaatacaatttcaagt-catatgaaatctcttactcacccgccactacaccacaggtactaaatgttttgccaaagcatttcctgacagaaagagaagaa |
114 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||| ||||| | |||||||||| |||| |
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| T |
44109145 |
aaatacaatttcaagtgcatatgaaatctcttactcacccaccattacaccacagatactaaatgttttgccaaaccattttccaacagaaagaggagaa |
44109244 |
T |
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| Q |
115 |
cgtgctatctacactt |
130 |
Q |
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||||||||||||||| |
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| T |
44109245 |
tgtgctatctacactt |
44109260 |
T |
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