View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3577_low_16 (Length: 251)
Name: NF3577_low_16
Description: NF3577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3577_low_16 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 32726596 - 32726836
Alignment:
| Q |
11 |
caaaggaagaatctcttaaacctaaatatcacaagtatttgtatcttgatatccatgtgttcagcaaagtttgactatcaaggcccactcctttcatggg |
110 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32726596 |
caaaggaagaatctcttaaacctaaatatcgcaagtatttgtatcttgatatccatgtgttcagcaaagtttgactatcaaggcccactcctttcatggg |
32726695 |
T |
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| Q |
111 |
aaataaaatagttctcaaacttttggacttggggaaaaaaccaatgtccagtgaattattttcgacaactgttacttgtcttgtatgttcaggtatattc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32726696 |
aaataaaatagttctcaaacttttggacttggggaaaaaaccaatgtccagtgaattattttcgacaactgttacgtgtcttgtatgttcaggtatattc |
32726795 |
T |
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| Q |
211 |
ctagtatgtgaatctaccgctacaaactcctctttcgcaac |
251 |
Q |
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| T |
32726796 |
ctagtatgtgaatctaccgctacaaactcctctttcgcaac |
32726836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 35981029 - 35981143
Alignment:
| Q |
11 |
caaaggaagaatctcttaaacctaaatatcacaagtatttgtatcttgatatccatgtgttcagcaaagtttgactatcaaggcccactcctttcatggg |
110 |
Q |
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|||| ||||||| |||||| ||||||||| |||||||||||||||||||||||| | | |||| ||||| |||| |||| |||| |||||| ||||| |
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| T |
35981029 |
caaatgaagaattacttaaatctaaatatcttaagtatttgtatcttgatatccatatatctagcagagtttcactagcaagacccagtcctttgatggg |
35981128 |
T |
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| Q |
111 |
aaataaaatagttct |
125 |
Q |
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| T |
35981129 |
aaataataaagttct |
35981143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 36002441 - 36002555
Alignment:
| Q |
11 |
caaaggaagaatctcttaaacctaaatatcacaagtatttgtatcttgatatccatgtgttcagcaaagtttgactatcaaggcccactcctttcatggg |
110 |
Q |
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|||| ||||||| |||||| ||||||||| |||||||||||||||||||||||| | | |||| ||||| |||| |||| |||| |||||| ||||| |
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| T |
36002441 |
caaatgaagaattacttaaatctaaatatcttaagtatttgtatcttgatatccatatatctagcagagtttcactagcaagacccagtcctttgatggg |
36002540 |
T |
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| Q |
111 |
aaataaaatagttct |
125 |
Q |
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|||||| | |||||| |
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| T |
36002541 |
aaataataaagttct |
36002555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 36218628 - 36218521
Alignment:
| Q |
36 |
atatcacaagtatttgtatcttgatatccatgtgttcagcaaagtttgactatcaaggcccactcctttcatgggaaataaaatagttctcaaacttttg |
135 |
Q |
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||||| ||||||||| ||| |||||| ||| || | || ||| |||| | | |||||||||||||||| | ||||||||||||||||| | ||||||| |
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| T |
36218628 |
atatcgcaagtatttatattttgatacccacgtatgcaccaatgtttcattgtcaaggcccactccttcgacaggaaataaaatagttcttacacttttg |
36218529 |
T |
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| Q |
136 |
gacttggg |
143 |
Q |
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|||||||| |
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| T |
36218528 |
gacttggg |
36218521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 26329686 - 26329555
Alignment:
| Q |
11 |
caaaggaagaatctcttaaacctaaatatcacaagtatttgtatcttgatatccatgtgttcagcaaagtttgactatcaaggcccactcctttcatggg |
110 |
Q |
| |
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|||| |||||||| |||||| ||||||| | |||||||||||||||||||||||||| | || | ||||| |||||| | || ||||||| ||||| |
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| T |
26329686 |
caaatgaagaatcacttaaatctaaatagcgcaagtatttgtatcttgatatccatgaatccaagagagtttcactatcgacacctactccttggatggg |
26329587 |
T |
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| Q |
111 |
aaataaaatagttctcaaacttttggacttgg |
142 |
Q |
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| | ||||||||||||| |||||| ||||||| |
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| T |
26329586 |
acacaaaatagttctcacacttttcgacttgg |
26329555 |
T |
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