View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3577_low_20 (Length: 243)
Name: NF3577_low_20
Description: NF3577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3577_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 42621509 - 42621719
Alignment:
| Q |
17 |
agatagtgaattcattgattgataaggattgtacaagtactatttatatacaaatgaagctctatgctagcttattgtgcaagtaatcacacaggaccat |
116 |
Q |
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| T |
42621509 |
agatagtgaattcattgatttataaggattgta-aagtactatttatatacaaatgaagctctatgctagcttattgtgcaagtaatcacacaggaccat |
42621607 |
T |
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| Q |
117 |
tgtaactaactaattagcaagctaacttgcagtttagaaacaaacatgagcaaatcacaatacatacaaattcactatggaactaggtaatttgcaatca |
216 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42621608 |
tgtaactaactaattagcatgctaacttgcagtttagtaacaaacatgagcaaatcgcaatacatacaaattcactatggaactaggtaatatgcaatca |
42621707 |
T |
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| Q |
217 |
tcttaacttcat |
228 |
Q |
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|||||||||||| |
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| T |
42621708 |
tcttaacttcat |
42621719 |
T |
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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 45639639 - 45639546
Alignment:
| Q |
19 |
atagtgaattcattgattgataaggattgtacaagtactatttatatacaaatgaagctctatgctagcttattgtgcaagtaatcacacagga |
112 |
Q |
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| T |
45639639 |
atagtgaatccattaattgataatgactgtacaagtgctatttatatacaaatgtagctcaatggtagcttattgtgcaagtaatcacatagga |
45639546 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 9101067 - 9101176
Alignment:
| Q |
19 |
atagtgaattcattgattgataaggattgtacaagtactatttatatacaaatgaagctctatgctagcttattgtgcaagtaatcacacaggaccattg |
118 |
Q |
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| T |
9101067 |
atagtaaattcattgattgataatgattgtacaacctctatttatatacgaatgaagctatactgtagcttattgtgcaagtaatcacgtaggatcactg |
9101166 |
T |
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| Q |
119 |
taactaacta |
128 |
Q |
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||||||||| |
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| T |
9101167 |
aaactaacta |
9101176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 45210790 - 45210702
Alignment:
| Q |
57 |
tatttatatacaaatgaagctctatgctagcttattgtgcaagtaatcacacaggaccattgtaactaactaattagcaagctaacttg |
145 |
Q |
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| T |
45210790 |
tatttatatacaaatgaagctctattctagcttattgtgcatgtagtcacataggatcacttaaactaactacttagcaaggtaacttg |
45210702 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 38638340 - 38638434
Alignment:
| Q |
19 |
atagtgaattcattgattga-taaggattgtacaagtactatttatatacaaatgaagctctatgctagcttattgtgcaagtaatcacacagga |
112 |
Q |
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| T |
38638340 |
atagtgaattcaatgattgaatattgaatgtacaattgctatttatatacaaatgagactctatgctagcttattgtgtaagtaaccacacagga |
38638434 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 33739765 - 33739838
Alignment:
| Q |
64 |
atacaaatgaagctctatgctagcttattgtgcaagtaatcacacaggaccattgtaactaactaattagcaag |
137 |
Q |
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|||||||||||||||| | || ||||||||||||||||||||| |||| ||||| |||||||| |||||||| |
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| T |
33739765 |
atacaaatgaagctctgtcgtaacttattgtgcaagtaatcacataggattattgttactaactacttagcaag |
33739838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 29423962 - 29424013
Alignment:
| Q |
56 |
ctatttatatacaaatgaagctctatgctagcttattgtgcaagtaatcaca |
107 |
Q |
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|||||||||||||||||| |||||||||| ||||||||| |||||||||| |
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| T |
29423962 |
ctatttatatacaaatgagactctatgctatcttattgtgtgagtaatcaca |
29424013 |
T |
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