View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3577_low_4 (Length: 427)
Name: NF3577_low_4
Description: NF3577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3577_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 214 - 415
Target Start/End: Complemental strand, 33614110 - 33613906
Alignment:
| Q |
214 |
gtgtatatcttaaacccaaaaacaatcgtatctaacactctactaaagaagttatggaaaccaaagctgagagac----ttattccctctgcatcattta |
309 |
Q |
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| T |
33614110 |
gtgtatatcttaaatccaaaaacaatcgtatctaacgctctactaaagaagttatggaaaccaaagctgagagacaaagttattccctctgcatcatttg |
33614011 |
T |
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| Q |
310 |
cttgaagtaaagataatcacagttgaaaaatcatatccggccccgacaaatttcagcttccatcaataggtcttaaagatattttttgggcatgtccctt |
409 |
Q |
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| T |
33614010 |
cttgaggtaaagataatcacagttgaaaaatcacatccggccccgacaaatttcagcttccat-aataggtcttaaagatattttttgggcatgtccctt |
33613912 |
T |
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| Q |
410 |
taccta |
415 |
Q |
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|||||| |
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| T |
33613911 |
taccta |
33613906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 27 - 159
Target Start/End: Complemental strand, 33614297 - 33614165
Alignment:
| Q |
27 |
cccgcaaaactagctgaatgaagatttaagcattgtaggccatgtcgtttggcggctagtaggcaataattatactatactataaatactccgttcatac |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33614297 |
cccgcaaaactagctgaatgaagatttaagcattgtaggccatgtcgtttggcggctagtaggcaataattatactatactataaatacaccgttcatac |
33614198 |
T |
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| Q |
127 |
atagtaattattacatccaatcaatcaaataag |
159 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
33614197 |
atagtaattattacatccaatcaatcaaataag |
33614165 |
T |
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