View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3577_low_6 (Length: 417)
Name: NF3577_low_6
Description: NF3577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3577_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 10 - 394
Target Start/End: Original strand, 54909849 - 54910233
Alignment:
| Q |
10 |
gacatcatcaagaaattgatcaaaaagaaaagacactgtcaaaagaaaattgtcgggtcctagacatcctataattctaataaactcattggactgagtg |
109 |
Q |
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| T |
54909849 |
gacatcatcaagaaattgatcaaaaagaaaagacactgtcaaaagaaaattgtcgggtcctagacatcctataattctaataaactcattgtactgagtg |
54909948 |
T |
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| Q |
110 |
ccaattgaaaaacccatgaagctaaagactaagtgacatgggcactattgaagttgagggtaaatttccataaacaaactgattatgaaacctcaaaaaa |
209 |
Q |
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| T |
54909949 |
ccaattgaaaaacctatgaagctaaagactaagtgacatgggcactattgaagttgagggtaaatttccataaacaaactgattatgaaacctcaaaaaa |
54910048 |
T |
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| Q |
210 |
gatgaacctatcttttaacaaatcctaagcatttggtatgtctggaatcagtgatactaggactctgagtgagttgtttgtttgtttgggaagtgataga |
309 |
Q |
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| T |
54910049 |
gatgaacctatcttttaacaaatcctaagcatttggtatgtctggaatcagtgatactaggactctgagtgagttgtttgtttgtttgggaagtgataga |
54910148 |
T |
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| Q |
310 |
aagtttctccattgcgttgataaacttgcgcaaatacttgatgtactcggggaaagtttcaaggttgcaatggcctccaccttta |
394 |
Q |
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| T |
54910149 |
aagtttatccattgcgttgataaacttgcgcaaatacttgatgtactcggggaaagtttcaaggttgcaatggcctccaccttta |
54910233 |
T |
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