View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3577_low_9 (Length: 400)
Name: NF3577_low_9
Description: NF3577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3577_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 394
Target Start/End: Original strand, 53883819 - 53884193
Alignment:
| Q |
17 |
aaattgaaccaagcaattgagagcaaacaataaaactaccaaaatctaagaatcaaggactatgcaaaaatgatgaaatgaaactcgggtgaagacaatt |
116 |
Q |
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| T |
53883819 |
aaattgaaccaagcaattgagagcaaacaataaaactaccaaaatctaaggatcaaggactgtgcaaaaatgatgaaatgaaactcgggtgaagacaatt |
53883918 |
T |
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| Q |
117 |
ccattaaaaactactctgagaatcataagattacaaaagcacaatcccccacaaattagcttcctccaaaatgggaaacatgtnnnnnnnnntaaccttc |
216 |
Q |
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| T |
53883919 |
ccattaaaaactactctgagaatcataagattacaaaagcacaatcccccacaaattagcttcctccaaaatgggaaacatgtaaaaaaaaataaccttc |
53884018 |
T |
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| Q |
217 |
gtgcaattcaagcacaagggttagtactaactactaatactattctactatacattcatagattaaattcattcaacattaatattacatagcctgagaa |
316 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53884019 |
gtgcaattcaagcacaagg----gtactaactactaatactattctactatacattcatagattaaattcattcaacattaatattacatagcctgagaa |
53884114 |
T |
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| Q |
317 |
aaagc-cnnnnnnnnnnctcacaagctatttattattataaaagggtgaaaccattgttgttattagagcaattccaaa |
394 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
53884115 |
aaagctaaaaaaaaaaactcacaagctatttattattacaaaagggtgaaaccattgttgttattagagcaattccaaa |
53884193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 394
Target Start/End: Original strand, 53889933 - 53890307
Alignment:
| Q |
17 |
aaattgaaccaagcaattgagagcaaacaataaaactaccaaaatctaagaatcaaggactatgcaaaaatgatgaaatgaaactcgggtgaagacaatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
53889933 |
aaattgaaccaagcaattgagagcaaacaataaaactaccaaaatctaaggatcaaggactgtgcaaaaatgatgaaatgaaactcgggtgaagacaatt |
53890032 |
T |
|
| Q |
117 |
ccattaaaaactactctgagaatcataagattacaaaagcacaatcccccacaaattagcttcctccaaaatgggaaacatgtnnnnnnnnntaaccttc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
53890033 |
ccattaaaaactactctgagaatcataagattacaaaagcacaatcccccacaaattagcttcctccaaaatgggaaacatgtaaaaaaaaataaccttc |
53890132 |
T |
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| Q |
217 |
gtgcaattcaagcacaagggttagtactaactactaatactattctactatacattcatagattaaattcattcaacattaatattacatagcctgagaa |
316 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53890133 |
gtgcaattcaagcacaagg----gtactaactactaatactattctactatacattcatagattaaattcattcaacattaatattacatagcctgagaa |
53890228 |
T |
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| Q |
317 |
aaagc-cnnnnnnnnnnctcacaagctatttattattataaaagggtgaaaccattgttgttattagagcaattccaaa |
394 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
53890229 |
aaagctaaaaaaaaaaactcacaagctatttattattacaaaagggtgaaaccattgttgttattagagcaattccaaa |
53890307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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