View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3578_high_1 (Length: 1152)
Name: NF3578_high_1
Description: NF3578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3578_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 625; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 474 - 1141
Target Start/End: Original strand, 5638469 - 5639137
Alignment:
| Q |
474 |
aaataaattttaaattgtacttctgtttatgattagtggttgtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggcc |
573 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638469 |
aaataaattttaaattgtacttctgtttatgattagtggttgtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggcc |
5638568 |
T |
|
| Q |
574 |
acagaaggaggattctgcacgggaagtgcaagagttatagatcaccaagtatggtagtgtcatatgtgatactgttcataaccttcttggatttccatgt |
673 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638569 |
acagaaggaggattctgcacgggaagtgcaagagttatagatcaccaagtatggtagtgtcatatgtgatactgttcataaccttcttggatttccatgt |
5638668 |
T |
|
| Q |
674 |
atactgaaacactaaaagagaagaaagattgtaaatgtggaaattaagaatttacttcctccaaactcaaatttaagtnnnnnnnntagtcatggtttgt |
773 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5638669 |
atactgaaacactaaaagagaagaaagattgtaaatgtggaaattaagaatttacttcctccaaactcaaatttaagtaaaaaaaatagtcatggtttgt |
5638768 |
T |
|
| Q |
774 |
ggtccataatatataagaaaattctaattaattttactggattactgttatatttcaattagtgttaaacaccactcaattaatgctctcatgaaacaag |
873 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638769 |
ggtccataatatataagaaaattctaattaattttactggattactgttatatttcaattagtgttaaacaccactcaattaatgctctcatgaaacaag |
5638868 |
T |
|
| Q |
874 |
tttcaaaggaaatttagtga-gagaatgatagttcggagaatgcaattttcttattgcaccaagaaaaataagcaagcttaactaatattcttacttagt |
972 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
5638869 |
tttcaaaggaaatttagtgaagagaatgatagttcggagaatgcaattttcttattgcaccaagaaaaataagcaaggttaactaatattcttaattagt |
5638968 |
T |
|
| Q |
973 |
acgtatttagttaattttacttaaatttgagttcagagggagtgtttttcacggaacttctttcattttttcccccacgtttccttcattaatacctgaa |
1072 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5638969 |
acgtatttagttaattttacttaaatttgagttcggagggagtgtttttcacggaacttctttcattttttcccccacgtttccttcattaatacctgaa |
5639068 |
T |
|
| Q |
1073 |
tttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataaccaagtgattggttgatgatg |
1141 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5639069 |
tttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataaccaagtgattggttgatgatg |
5639137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 419
Target Start/End: Original strand, 5621804 - 5622206
Alignment:
| Q |
17 |
aggattgtagtaaacactttgagtctgttggtgttgctgttatattggtgtctattgcgatgttgttccttaaaaaagtattactaatctgctacttgcc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
5621804 |
aggattgtagtaaacactttgagtctgttggcgttgctgttatattggtgtctattgcgatgttgttccttaaaagagtattgctaatctgctacttgcc |
5621903 |
T |
|
| Q |
117 |
ctggttttctcaaccattaagttgtaatagttattttttctgtagttgtcatactaacgacatctattatgctcataatatgccttacctgctgcatgca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5621904 |
ctggttttctcaaccattaagttgtaatagttattttttctgtagttgtcatactaacaacatctattatgctcataatatgccttacctgctgcatgca |
5622003 |
T |
|
| Q |
217 |
aactaaaattgcttgatcagtaactattgacaattgtttcctcgacattttttcagaactctggccaaatagcacccttagatgagatcattaaattgaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5622004 |
aactaaaattgcttgatcagtaactattgacaattgtttcctcgacattttttcagaactctggccaaatagcacccttagatgagatcattaaattgaa |
5622103 |
T |
|
| Q |
317 |
ggaaaaatatcgttttcgtattttactggatgagagcaactcatttggtgtgcttggaagttctggaagagatctcactgaacactatggagttccagta |
416 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
5622104 |
ggaaaaatattgttttcgtattttactggatgagagcaactcatttggtgtgcttggaagttctggaagaggtctcactgaacactatggagttccagta |
5622203 |
T |
|
| Q |
417 |
tgt |
419 |
Q |
| |
|
||| |
|
|
| T |
5622204 |
tgt |
5622206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 1055 - 1121
Target Start/End: Original strand, 22965261 - 22965327
Alignment:
| Q |
1055 |
ccttcattaatacctgaatttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataac |
1121 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| |
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|
| T |
22965261 |
ccttcattaatacctgaatttgcaggtccgaactataaaatttgcatgattaagtgatgtgcataac |
22965327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 412 - 453
Target Start/End: Original strand, 5638407 - 5638448
Alignment:
| Q |
412 |
cagtatgtactaaaaagttctatttgggcgtgggtgtgtata |
453 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
5638407 |
cagtatgtactgaaaagttctatttgggcgtgggtgtgtata |
5638448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 2e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 267 - 421
Target Start/End: Complemental strand, 30634741 - 30634587
Alignment:
| Q |
267 |
tttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatatcgttttcgtattttactggatgagagcaactcatttggtg |
366 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
30634741 |
tttcagaattctggtcaaatagcacccttagatgatatcattaaattgaaggaaaaatatcggtttcgtattttactggatgagagcaactcatttggtg |
30634642 |
T |
|
| Q |
367 |
tgcttggaagttctggaagagatctcactgaacactatggagttccagtatgtac |
421 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
30634641 |
tgcttggaagttctggaagaggtctcactgaacactacggagttccagtatgtac |
30634587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 5e-56
Query Start/End: Original strand, 509 - 682
Target Start/End: Complemental strand, 30634501 - 30634326
Alignment:
| Q |
509 |
gtggttgtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggccacagaaggaggattctgcacgggaagtgcaagagt |
608 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
30634501 |
gtggtcgtgtgctgcaggttgagaagttagatcttataactgctgctatgggacatgcattggccacagaaggaggattctgcaccggaagtgcaagagt |
30634402 |
T |
|
| Q |
609 |
tatagatcaccaagtatggtagtgtcatatgtgatactg-ttcat-aaccttcttggatttccatgtatactgaaa |
682 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| |||||| ||||| |||| ||| |||||||| || |||||||| |
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|
| T |
30634401 |
tatagatcaccaggtatggtagtgtcatttgtaatactgattcataaaccaacttagatttccaagtgtactgaaa |
30634326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 267 - 421
Target Start/End: Complemental strand, 21423527 - 21423373
Alignment:
| Q |
267 |
tttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatatcgttttcgtattttactggatgagagcaactcatttggtg |
366 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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|
| T |
21423527 |
tttcagaattctggtcaaatagcacccttagatgatatcattaaattgaaggaaaaatatcggtttcgtattttactggatgagagcaactcatttggcg |
21423428 |
T |
|
| Q |
367 |
tgcttggaagttctggaagagatctcactgaacactatggagttccagtatgtac |
421 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21423427 |
tgcttggaagttctggaagaggtctcactgaacactatggagttccagtatgtac |
21423373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 515 - 636
Target Start/End: Complemental strand, 21423281 - 21423160
Alignment:
| Q |
515 |
gtgtgctgcaggttgataagttagatcttataactgctgctatgggacatgcactggccacagaaggaggattctgcacgggaagtgcaagagttataga |
614 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
21423281 |
gtgtgctgcaggttgagaagttagatcttataactgctgctatgggacatgcattggccacagaaggaggattctgcaccggaagtgcaagagttataga |
21423182 |
T |
|
| Q |
615 |
tcaccaagtatggtagtgtcat |
636 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
21423181 |
tcaccaggtatggtagtgtcat |
21423160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 1057 - 1121
Target Start/End: Complemental strand, 38954654 - 38954590
Alignment:
| Q |
1057 |
ttcattaatacctgaatttgcaggtctgaactataaaatttgcatgataaagcgatgtgcataac |
1121 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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|
| T |
38954654 |
ttcattaatacctgaatttgcaggtccaaactataaaatttgcatgattaagcgatgtgcataac |
38954590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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