View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3578_high_3 (Length: 554)
Name: NF3578_high_3
Description: NF3578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3578_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 17 - 543
Target Start/End: Original strand, 45065265 - 45065795
Alignment:
| Q |
17 |
atgttcaacatgttcaggagaatgaaaaggggaaatcaccaggttctgatcctctttattggccttcctagcgagctttccttattaaattgtttcaagc |
116 |
Q |
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| T |
45065265 |
atgttcaacatgttcaggagaatgaaaaggggaaatcaccaggttctgatcctctttattggccttcctagcgagctttccttattaaattgtttcaagc |
45065364 |
T |
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| Q |
117 |
tactttttccaatcattgtgaattgtctccttggtttgcttgattggaaaaaacaccatcactgcaaaacaataacacaagaaagtggtgttaaccttga |
216 |
Q |
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| T |
45065365 |
tactttttccaatcattgtgaattgtctccttggtttgcttgattggaaaaaaccccatcactgcaaaacaataacacaagaaagtggtgttaaccttga |
45065464 |
T |
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| Q |
217 |
gagttgagagtttcttcttcttctttccttttagagtttttggacataaaagtaggatgttaagaacgatgttcaagtattgcatcatcttcattaagga |
316 |
Q |
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| T |
45065465 |
gagttgagagttttttcttcttctttccttttagagtttttggacataaaagtaggatgttaagaacgatgttcaagtattgcatcatcttcactaagga |
45065564 |
T |
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| Q |
317 |
ttagttggtagatatataaaattgagataatataatttagcaagggaccaaattgaaaatattgatttgttagggacttaaaataggttttcttgcgatt |
416 |
Q |
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| T |
45065565 |
ttagttggtagatatataaaattgagataatataatttagcaagggaccaaattgaaaatattgatttgttagggacttaaaataggttttcttgcgatt |
45065664 |
T |
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| Q |
417 |
agaatagataataatgtactgattatatatgtttgtgttgtccnnnnnnnnngcaaaaatatgcaacttatcaccaaattta----ttttgttatcactt |
512 |
Q |
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| T |
45065665 |
agaatagataataatgtactgattatatatgtttgtgttatcctttttttttgcaaaaatatgcaacttatcaccaaatttatcttttttgttatcactt |
45065764 |
T |
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| Q |
513 |
tagttcttcatatggatgaaaagttgatatt |
543 |
Q |
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| T |
45065765 |
tagttcttcatatggatgaaaagttgatatt |
45065795 |
T |
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