View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3578_high_4 (Length: 463)

Name: NF3578_high_4
Description: NF3578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3578_high_4
NF3578_high_4
[»] chr4 (1 HSPs)
chr4 (12-442)||(13615463-13615893)
[»] chr1 (4 HSPs)
chr1 (12-194)||(7582542-7582724)
chr1 (247-442)||(7098017-7098212)
chr1 (202-442)||(7582989-7583229)
chr1 (12-127)||(7098589-7098704)
[»] chr5 (10 HSPs)
chr5 (202-442)||(17981545-17981785)
chr5 (12-136)||(17982083-17982207)
chr5 (67-136)||(4380823-4380892)
chr5 (114-186)||(30205625-30205697)
chr5 (67-136)||(30339394-30339463)
chr5 (67-194)||(30059464-30059591)
chr5 (340-442)||(30202752-30202854)
chr5 (67-132)||(29871355-29871420)
chr5 (67-136)||(30243241-30243310)
chr5 (67-132)||(30399234-30399299)


Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 12 - 442
Target Start/End: Complemental strand, 13615893 - 13615463
Alignment:
Q  12 tcatcacttggtaaactaccatctctaaaagaactccatttatccaaagtgtctgtgaaacacttggatgaggatgaatttgaaaatggtgtggagatga 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13615893 tcatcacttggtaaactaccatctctaaaagaactccatttatccaaagtgtctgtgaaacacttgaatgaggatgaatttgaaaatggtgtggagatga 13615794  T
Q  112 gaattttcccatctctggaggtactaataatagaagacttaccaaacttagataggttgttaaaagtggaaagagaggagatgataatctttcaacctag 211  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  13615793 gaattttcccatctctggaggaactaataatagaagacttaccaaacttagataggttgttaaaagtggaaagagaggagatgagaatctttcaacttag 13615694  T
Q  212 ctttggagcatcttaatatccggatttgcaacgaacttgagtatttactagagaaattatggggaggtcgacaatcacttcaatctatggtgattaatca 311  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13615693 ctttggagcatcttaatatccggatttgccacgaacttgagtatttaccagagaaattatggggaggtcggcaatcacttcaatctatggtgattaatca 13615594  T
Q  312 ttgtcgtaaattaaaatgcctgtcggacggtattagacacctcattccacttgattcgttgaatatatttggatgcccagcattgaagaagcgatgcaag 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  13615593 ttgtcgtaaattaaaatgcctgtcggacggtattagacacctcattgcacttgattcgttgaatatttttggatgcccaacattgaagaagcgatgcaag 13615494  T
Q  412 gagggaagatgggaagaccgggacaagatag 442  Q
    ||||||| |||||||||| ||||||||||||    
T  13615493 gagggaacatgggaagactgggacaagatag 13615463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 7582542 - 7582724
Alignment:
Q  12 tcatcacttggtaaactaccatctctaaaagaactccatttatccaaagtgtctgtgaaacacttggatgaggatgaatttgaaaatggtgtggagatga 111  Q
    ||||||||||||||||||||||||||||||  ||| ||  || ||   |||||||||||| |||||||||| ||||||||| | |||||| ||||  |||    
T  7582542 tcatcacttggtaaactaccatctctaaaaacacttcaaataaccttggtgtctgtgaaatacttggatgatgatgaatttcacaatggtttggaagtga 7582641  T
Q  112 gaattttcccatctctggaggtactaataatagaagacttaccaaacttagataggttgttaaaagtggaaagagaggagatg 194  Q
    |||||||||||||||| |||||||| ||||| || |||||||||||||||||  ||||||| |||||||||| | ||||||||    
T  7582642 gaattttcccatctcttgaggtacttataattgatgacttaccaaacttagaggggttgttgaaagtggaaaaaaaggagatg 7582724  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 247 - 442
Target Start/End: Complemental strand, 7098212 - 7098017
Alignment:
Q  247 cttgagtatttactagagaaattatggggaggtcgacaatcacttcaatctatggtgattaatcattgtcgtaaattaaaatgcctgtcggacggtatta 346  Q
    ||||||||||||| ||||||| ||||||||||||  ||||||||||||||||||  ||||  | |||||   | |||||||||| || | || |||||||    
T  7098212 cttgagtatttaccagagaaaatatggggaggtctgcaatcacttcaatctatgaggatttcttattgtgaaagattaaaatgcttgccagatggtatta 7098113  T
Q  347 gacacctcattccacttgattcgttgaatatatttggatgcccagcattgaagaagcgatgcaaggagggaagatgggaagaccgggacaagatag 442  Q
    |||||||||   ||||||||||||||| |||  ||||||||||| |||||| | |||||||||||||||||| | |||||||| ||||||||||||    
T  7098112 gacacctcaccgcacttgattcgttgactattgttggatgcccaacattgacggagcgatgcaaggagggaacaggggaagactgggacaagatag 7098017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 202 - 442
Target Start/End: Original strand, 7582989 - 7583229
Alignment:
Q  202 ttcaacctagctttggagcatcttaatatccggatttgcaacgaacttgagtatttactagagaaattatggggaggtcgacaatcacttcaatctatgg 301  Q
    |||||||||| |||||||||||| ||||||    ||||| | || ||||||||||||| ||||||| |||||||||||   |||||||| ||||| |||     
T  7582989 ttcaacctagttttggagcatctgaatatcgctttttgcgatgagcttgagtatttaccagagaaaatatggggaggtttgcaatcactacaatccatga 7583088  T
Q  302 tgattaatcattgtcgtaaattaaaatgcctgtcggacggtattagacacctcattccacttgattcgttgaatatatttggatgcccagcattgaagaa 401  Q
     |||| ||  ||||   |||||||||||| || | || |||||||||||||||| | ||||||||| |||||||||   ||||||||||  ||||| | |    
T  7583089 ggatttattgttgtaaaaaattaaaatgcttgccagatggtattagacacctcactgcacttgatttgttgaatattgctggatgcccaatattgacgga 7583188  T
Q  402 gcgatgcaaggagggaagatgggaagaccgggacaagatag 442  Q
    || ||||||| |||||| | |||||||| || |||||||||    
T  7583189 gctatgcaagaagggaacaggggaagactggaacaagatag 7583229  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 7098704 - 7098589
Alignment:
Q  12 tcatcacttggtaaactaccatctctaaaagaactccatttatccaaagtgtctgtgaaacacttggatgaggatgaatttgaaaatggtgtggagatga 111  Q
    |||||||||||||||||||||| ||||||| |||||   |||| |   |||||||||||| ||||||||||  |||||||| | |||||| ||||| | |    
T  7098704 tcatcacttggtaaactaccatatctaaaaaaactcatattattcggtgtgtctgtgaaatacttggatgataatgaatttcacaatggtatggaggtaa 7098605  T
Q  112 gaattttcccatctct 127  Q
    | ||||||||||||||    
T  7098604 ggattttcccatctct 7098589  T

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Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 202 - 442
Target Start/End: Complemental strand, 17981785 - 17981545
Alignment:
Q  202 ttcaacctagctttggagcatcttaatatccggatttgcaacgaacttgagtatttactagagaaattatggggaggtcgacaatcacttcaatctatgg 301  Q
    ||||||||||||||| |||||||  |||||    | |||| ||| ||||||||||||| ||||||| ||||||||||||  |||||||||||||||||||    
T  17981785 ttcaacctagctttgaagcatctggatatcaatttgtgcagcgagcttgagtatttaccagagaaaatatggggaggtctgcaatcacttcaatctatgg 17981686  T
Q  302 tgattaatcattgtcgtaaattaaaatgcctgtcggacggtattagacacctcattccacttgattcgttgaatatatttggatgcccagcattgaagaa 401  Q
    |||||  | ||||| | ||||| |||||| || ||||||||||||||||||| | | |||||||||| || | |||   || ||||||| ||||| ||||    
T  17981685 tgattgttgattgtaggaaattgaaatgcttgccggacggtattagacaccttactgcacttgattcattaactattcgtgcatgcccaacattggagaa 17981586  T
Q  402 gcgatgcaaggagggaagatgggaagaccgggacaagatag 442  Q
    ||||||||| |||||||   | |||||| ||||||||||||    
T  17981585 gcgatgcaatgagggaaccggagaagactgggacaagatag 17981545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 17982207 - 17982083
Alignment:
Q  12 tcatcacttggtaaactaccatctctaaaagaactccatttatccaaagtgtctgtgaaacacttggatgaggatgaatttgaaaatggtgtggagatga 111  Q
    |||||||||||||||||||||||||||||| ||||  |  ||| ||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  17982207 tcatcacttggtaaactaccatctctaaaaaaacttgaactattcaatgtgtctgtgaaatacttggatgatgatgaatttgaaaatggtgtggagatga 17982108  T
Q  112 gaattttcccatctctggaggtact 136  Q
     || |||||||||||||||| ||||    
T  17982107 taaatttcccatctctggagatact 17982083  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 4380892 - 4380823
Alignment:
Q  67 tgaaacacttggatgaggatgaatttgaaaatggtgtggagatgagaattttcccatctctggaggtact 136  Q
    ||||| |||||||||| |||||||||||  ||||| ||||| ||||  ||||||||||||||||||||||    
T  4380892 tgaaatacttggatgatgatgaatttgaggatggtatggaggtgagggttttcccatctctggaggtact 4380823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 30205697 - 30205625
Alignment:
Q  114 attttcccatctctggaggtactaataatagaagacttaccaaacttagataggttgttaaaagtggaaagag 186  Q
    ||||||||||||||||||||||| ||| |||||  | |||||||||||||  |||| || |||||||||||||    
T  30205697 attttcccatctctggaggtactcatattagaaatcctaccaaacttagaagggttattgaaagtggaaagag 30205625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 30339394 - 30339463
Alignment:
Q  67 tgaaacacttggatgaggatgaatttgaaaatggtgtggagatgagaattttcccatctctggaggtact 136  Q
    ||||| |||||||||| ||||||| |||  ||||| ||||| ||||  ||||||||||||||||||||||    
T  30339394 tgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggtact 30339463  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 194
Target Start/End: Complemental strand, 30059591 - 30059464
Alignment:
Q  67 tgaaacacttggatgaggatgaatttgaaaatggtgtggagatgagaattttcccatctctggaggtactaataatagaagacttaccaaacttagatag 166  Q
    ||||| |||||||||| ||||||| |||  ||||| ||||| ||||  |||||||||||||||||| |||  || || |  | ||||||||| ||||  |    
T  30059591 tgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggaactcgtattatatcagttaccaaacatagaggg 30059492  T
Q  167 gttgttaaaagtggaaagagaggagatg 194  Q
     || || ||||||||||||| |||||||    
T  30059491 tttattgaaagtggaaagaggggagatg 30059464  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 442
Target Start/End: Complemental strand, 30202854 - 30202752
Alignment:
Q  340 ggtattagacacctcattccacttgattcgttgaatatatttggatgcccagcattgaagaagcgatgcaaggagggaagatgggaagaccgggacaaga 439  Q
    |||||||||||||||| | ||||||||| | |||  || || || ||||||  ||||||| | |||||||||||||||| | ||||  || |||||||||    
T  30202854 ggtattagacacctcacttcacttgatttgctgacaattttcggttgcccaatattgaaggaacgatgcaaggagggaacaggggagaactgggacaaga 30202755  T
Q  440 tag 442  Q
    |||    
T  30202754 tag 30202752  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 29871420 - 29871355
Alignment:
Q  67 tgaaacacttggatgaggatgaatttgaaaatggtgtggagatgagaattttcccatctctggagg 132  Q
    ||||| |||||||||| ||||||| | |  ||||| ||||| |||| |||||||||||||||||||    
T  29871420 tgaaatacttggatgatgatgaatctcaggatggtatggaggtgaggattttcccatctctggagg 29871355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 30243241 - 30243310
Alignment:
Q  67 tgaaacacttggatgaggatgaatttgaaaatggtgtggagatgagaattttcccatctctggaggtact 136  Q
    ||||| |||||||||| ||||||| |||  ||||| ||||| ||||  ||||||||||||| ||||||||    
T  30243241 tgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctagaggtact 30243310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 30399299 - 30399234
Alignment:
Q  67 tgaaacacttggatgaggatgaatttgaaaatggtgtggagatgagaattttcccatctctggagg 132  Q
    ||||| |||||||||| ||||||| | |  ||||||||||| ||||  ||||||||||||||||||    
T  30399299 tgaaatacttggatgatgatgaatctcaggatggtgtggaggtgagggttttcccatctctggagg 30399234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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