View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3578_high_8 (Length: 311)
Name: NF3578_high_8
Description: NF3578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3578_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 32508129 - 32508432
Alignment:
| Q |
1 |
cctccaaactttagtttggattttattagaagacaaatcaatggtgtgactgtgactcatgatttagctagagcaacacaatttatacctagtcgtcata |
100 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32508129 |
cctccaaactttagtttgaatttcattagaagacaaatcaatggtgtgactgtgactcatgatttagctagagcaacacaatttatacctagtcctcata |
32508228 |
T |
|
| Q |
101 |
ttttatccatgcaccctcttgtattgctaacttcattattaataaaatcaaaatgcaacaagctctatgacatattgatcataacaatgattggtgatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32508229 |
ttttatccatgcaccctcttgtattgctaacttcattattaataaaatcaaaatgcaacaagctctatgacatattgatcataacaatgattggtgatca |
32508328 |
T |
|
| Q |
201 |
aacagataaagtgcggagtgtgcatgaaattctagaaccaattaaacaatcctttagtaaaaataa-ttcgcaaacttaatgcttgacacctaaatattc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
32508329 |
aacagataaagtgcggagtgtgcatgaaattctagaaccaattaaacaatcctttagtaaaaataatttcacaaacttaatgcttgacacctaaatattc |
32508428 |
T |
|
| Q |
300 |
attt |
303 |
Q |
| |
|
|||| |
|
|
| T |
32508429 |
attt |
32508432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 21903106 - 21903245
Alignment:
| Q |
5 |
caaactttagtttggattttattagaagacaaatcaatggtgtgactgtgactcatgatttagctagagcaacacaatttatacctagtcgtcatatttt |
104 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||| |||| | ||||||||| |
|
|
| T |
21903106 |
caaactttagtttgaatttcattagaagacaaatcaatggtgtgtc----actcatgatttagctatagcaacacaatttatagctaggcctcatatttt |
21903201 |
T |
|
| Q |
105 |
atccatgcaccctcttgtattgctaacttcattattaataaaat |
148 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
21903202 |
atccatgcaccctcttgtattgctcactttattattaataaaat |
21903245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 163 - 268
Target Start/End: Original strand, 32512844 - 32512949
Alignment:
| Q |
163 |
ctctatgacatattgatcataacaatgattggtgatcaaacagataaagtgcggagtgtgcatgaaattctagaaccaattaaacaatcctttagtaaaa |
262 |
Q |
| |
|
|||||||| ||||||||| |||||| ||| ||| ||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32512844 |
ctctatgaaatattgatcttaacaaggatgggttatcaaacagataaagtgagtagcatgcatgaaattctagaaccaattaaacaatcctttagtacaa |
32512943 |
T |
|
| Q |
263 |
ataatt |
268 |
Q |
| |
|
||||| |
|
|
| T |
32512944 |
ttaatt |
32512949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 207 - 303
Target Start/End: Original strand, 21903352 - 21903449
Alignment:
| Q |
207 |
taaagtgcggagtgtgcatgaaattctagaaccaattaaacaatcctttagtaaaaataa-ttcgcaaacttaatgcttgacacctaaatattcattt |
303 |
Q |
| |
|
||||||| |||| ||| |||||||||||||||||||||||||||||||||||| |||||| ||| || ||| ||||||||||||| ||||||||||| |
|
|
| T |
21903352 |
taaagtgaggagcgtgtatgaaattctagaaccaattaaacaatcctttagtacaaataatttcataagctttatgcttgacacctgaatattcattt |
21903449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University