View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3578_low_12 (Length: 278)

Name: NF3578_low_12
Description: NF3578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3578_low_12
NF3578_low_12
[»] chr2 (6 HSPs)
chr2 (11-266)||(41650142-41650397)
chr2 (18-265)||(43227769-43228016)
chr2 (101-258)||(43224056-43224208)
chr2 (132-265)||(41654683-41654816)
chr2 (132-265)||(43213347-43213480)
chr2 (133-265)||(43206374-43206506)
[»] chr8 (2 HSPs)
chr8 (144-236)||(5073627-5073719)
chr8 (32-68)||(13267906-13267942)
[»] scaffold0633 (1 HSPs)
scaffold0633 (32-68)||(8943-8979)
[»] chr1 (1 HSPs)
chr1 (32-68)||(41666250-41666286)
[»] chr4 (2 HSPs)
chr4 (32-71)||(43365909-43365948)
chr4 (34-64)||(49888328-49888358)
[»] chr3 (2 HSPs)
chr3 (9-64)||(25189514-25189569)
chr3 (35-64)||(39450803-39450832)
[»] chr7 (1 HSPs)
chr7 (9-61)||(37327454-37327506)


Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 41650397 - 41650142
Alignment:
Q  11 atgaacgtcgataaagttgttagaaaattctcttgaaaacttcatttaaaacatgttacattcaaaaccaagataaaaatccataattggaaaccaaaac 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41650397 atgaacgtcaataaagttgttagaaaattctcttgaaaacttcatttaaaacatgttacattcaaaaccaagataaaaacccataattggaaaccaaaac 41650298  T
Q  111 actcaggaaaaaatgtagacatacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataaca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41650297 actcaggaaaaaatgtagacatacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataaca 41650198  T
Q  211 cctgtcactgcaactggatgtttatatgggacacctaattcatccaatattgttcg 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41650197 cctgtcactgcaactggatgtttatatgggacacctaattcatccaattttgttcg 41650142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 43227769 - 43228016
Alignment:
Q  18 tcgataaagttgttagaaaattctcttgaaaacttcatttaaaacatgttacattcaaaaccaagataaaaatccataattggaaaccaaaacactca-g 116  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||| |||| || || |||| |||||||||| |    
T  43227769 tcgataaaattgttagaaaattctcttgaaaacttcatttaaaacatgtgatatagaaaaccaagataaaa-tccacaactgaaaactaaaacactcaag 43227867  T
Q  117 gaaaaaatgtagacatacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtc 216  Q
    |||||||   |  || ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  43227868 gaaaaaaaaaatgcagacctgcatgagaagagcatccatgtcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgta 43227967  T
Q  217 actgcaactggatgtttatatgggacacctaattcatccaatattgttc 265  Q
    ||||||||||||||||||||| | ||||| || ||||||||| ||||||    
T  43227968 actgcaactggatgtttatattgaacacccaactcatccaattttgttc 43228016  T

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Target: chr2; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 101 - 258
Target Start/End: Original strand, 43224056 - 43224208
Alignment:
Q  101 aaaccaaaacactcaggaaaaaatgtagacatacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgta 200  Q
    |||||||||||||||| |||||||||||||    ||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||    
T  43224056 aaaccaaaacactcag-aaaaaatgtagac----ctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgta 43224150  T
Q  201 accaataacacctgtcactgcaactggatgtttatatgggacacctaattcatccaat 258  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  43224151 accaataacacctgtcactgcaactggatgtttatattgaacacctaattcatccaat 43224208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 132 - 265
Target Start/End: Complemental strand, 41654816 - 41654683
Alignment:
Q  132 tacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt 231  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41654816 tacctgcataagaagagcatccatttcagctctgagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt 41654717  T
Q  232 ttatatgggacacctaattcatccaatattgttc 265  Q
    |||||||  ||||| |||||||||||| ||||||    
T  41654716 ttatatgtaacacccaattcatccaattttgttc 41654683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 132 - 265
Target Start/End: Original strand, 43213347 - 43213480
Alignment:
Q  132 tacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt 231  Q
    ||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  43213347 tacctgcataagaagagcatccatctcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactacaactggatgt 43213446  T
Q  232 ttatatgggacacctaattcatccaatattgttc 265  Q
    ||||||||||||||||||||||| ||| ||||||    
T  43213447 ttatatgggacacctaattcatctaattttgttc 43213480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 133 - 265
Target Start/End: Original strand, 43206374 - 43206506
Alignment:
Q  133 acctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt 232  Q
    ||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43206374 acctgaataagaagagcatccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt 43206473  T
Q  233 tatatgggacacctaattcatccaatattgttc 265  Q
    ||||| | ||||| || ||||||||| ||||||    
T  43206474 tatattgaacacccaactcatccaattttgttc 43206506  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 236
Target Start/End: Original strand, 5073627 - 5073719
Alignment:
Q  144 aagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtttata 236  Q
    ||||||||||||||||||||| | ||| ||||||||||  |  |||||||||||| ||||||| ||||| || | ||||||||||| ||||||    
T  5073627 aagagcatccatatcagctcttaaagcaacaaaaggagacaatccagttcctatgaaaccaatgacaccagtgattgcaactggatatttata 5073719  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 13267942 - 13267906
Alignment:
Q  32 agaaaattctcttgaaaacttcatttaaaacatgtta 68  Q
    |||||||||  ||||||||||||||||||||||||||    
T  13267942 agaaaattcctttgaaaacttcatttaaaacatgtta 13267906  T

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Target: scaffold0633 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 8979 - 8943
Alignment:
Q  32 agaaaattctcttgaaaacttcatttaaaacatgtta 68  Q
    |||||||| ||||||||||||||||||||||||||||    
T  8979 agaaaattttcttgaaaacttcatttaaaacatgtta 8943  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 41666250 - 41666286
Alignment:
Q  32 agaaaattctcttgaaaacttcatttaaaacatgtta 68  Q
    |||||||| ||||||||||||||||||||||||||||    
T  41666250 agaaaattttcttgaaaacttcatttaaaacatgtta 41666286  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 43365948 - 43365909
Alignment:
Q  32 agaaaattctcttgaaaacttcatttaaaacatgttacat 71  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  43365948 agaaaattcccttaaaaacttcatttaaaacatgttacat 43365909  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 64
Target Start/End: Original strand, 49888328 - 49888358
Alignment:
Q  34 aaaattctcttgaaaacttcatttaaaacat 64  Q
    |||||||||||||||||||||||||||||||    
T  49888328 aaaattctcttgaaaacttcatttaaaacat 49888358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 25189569 - 25189514
Alignment:
Q  9 agatgaacgtcgataaagttgttagaaaattctcttgaaaacttcatttaaaacat 64  Q
    |||||||| | |||||| |||| |  ||||||||||||||||||||||||||||||    
T  25189569 agatgaacattgataaaattgtaacgaaattctcttgaaaacttcatttaaaacat 25189514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 39450803 - 39450832
Alignment:
Q  35 aaattctcttgaaaacttcatttaaaacat 64  Q
    ||||||||||||||||||||||||||||||    
T  39450803 aaattctcttgaaaacttcatttaaaacat 39450832  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 37327454 - 37327506
Alignment:
Q  9 agatgaacgtcgataaagttgttagaaaattctcttgaaaacttcatttaaaa 61  Q
    |||| ||| |||||||| |||  | ||||||||||||||||||||||||||||    
T  37327454 agattaacatcgataaaattgcaacaaaattctcttgaaaacttcatttaaaa 37327506  T

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