View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3578_low_2 (Length: 594)
Name: NF3578_low_2
Description: NF3578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3578_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 2053092 - 2053237
Alignment:
| Q |
29 |
agtagttaagtcgaaagactgaatcaatgataagttgttgaaatatagggacttaattgttatcttaagtgatttatgagagtatgttagggtctaaatt |
128 |
Q |
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||||||||| | |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2053092 |
agtagttaaatagaaagactgaatcaatagtaagttgttgaaatatagggacttaa--gttatcttaagtggtttatgagagtatgttagggtctaaatt |
2053189 |
T |
|
| Q |
129 |
gatagtaagtggttaatataaggaccaaatcgatagtaagtttttaaaa |
177 |
Q |
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| T |
2053190 |
g-tagtaagtggttaatataagaaccaaattgatagtaacttgttaaaa |
2053237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 301 - 513
Target Start/End: Original strand, 2053299 - 2053519
Alignment:
| Q |
301 |
aatttagtagtttactttataatttttgtggtagggtaaactttcactcttcctat------aatg---gcattaagaaaattagagttcacacaaaatt |
391 |
Q |
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||||| |||||||||||||||||| |||||| | |||||||||||| |||||||| |||| | ||||||||||||| |||| |||||||||| |
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| T |
2053299 |
aatttggtagtttactttataattattgtggcaaggtaaactttcattcttcctaatactaaaatgtaggtattaagaaaattatagtttacacaaaatt |
2053398 |
T |
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| Q |
392 |
tccatggtaataaaaagttagcaagattttggcaaacacaaaaaatcagtaaggtgaattacttccaaaaagcatattaaaatnnnnnnnntgttgtctc |
491 |
Q |
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| T |
2053399 |
tccatggtaataaaaagttagcaagattttctcaaacacataaagtcactaaggtgaattacttccaaaaagcatatcaaaat-aaaaaaatgttgtctc |
2053497 |
T |
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| Q |
492 |
agaatgaacttaaaaaatgtta |
513 |
Q |
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| T |
2053498 |
agaatgaatttaaaaaatgtta |
2053519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 1315126 - 1315073
Alignment:
| Q |
117 |
agggtctaaattgatagtaagtggtt-aatataaggaccaaatcgatagtaagt |
169 |
Q |
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| T |
1315126 |
agggactaaattgatattaagtggttaaatataaggatcaaattgatagtaagt |
1315073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 111 - 254
Target Start/End: Complemental strand, 683542 - 683398
Alignment:
| Q |
111 |
tatgttagggtctaaattgatagtaagtggttaatataaggaccaaatcgatagtaagtttttaaaacagaaagact-aattgatattaaggggctaaaa |
209 |
Q |
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|||| ||||| ||| |||||||||| |||| || || ||| ||||| |||||||| || |||||| | || |||| |||||||| |||| || |||| |
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| T |
683542 |
tatgctagggactacattgatagtaggtggaaaacttagggatcaaattgatagtaaattattaaaatataaggacttaattgataataagtggttaaat |
683443 |
T |
|
| Q |
210 |
ataaggatcaacttgaaaatttaatagagtcacacacctttttga |
254 |
Q |
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| T |
683442 |
ataaggatcaacttgacaatttaatagagtcagagacctttttga |
683398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 25025762 - 25025829
Alignment:
| Q |
111 |
tatgttagggtctaaattgatagtaagtggtt-aatataaggaccaaatcgatagtaagtttttaaaa |
177 |
Q |
| |
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| T |
25025762 |
tatgttagggactaaattgatagtaagtggttaaagataataatcaaatagatagtaagcttttaaaa |
25025829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 35537199 - 35537231
Alignment:
| Q |
125 |
aattgatagtaagtggttaatataaggaccaaa |
157 |
Q |
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| T |
35537199 |
aattgatagtaagtggttaatataaggatcaaa |
35537231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 9710228 - 9710166
Alignment:
| Q |
109 |
agtatgttagggtctaaattgatagtaagtggtta-atataaggaccaaatcgatagtaagtt |
170 |
Q |
| |
|
||||||| |||| ||||||||||||||||| |||| ||||||||||| ||| ||||||||||| |
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| T |
9710228 |
agtatgtgagggactaaattgatagtaagttgttatatataaggacctaattgatagtaagtt |
9710166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 40304521 - 40304448
Alignment:
| Q |
105 |
tgagagtatgttagggtctaaattgatagtaagtggttaa-tataaggaccaaatcgatagtaagtttttaaaa |
177 |
Q |
| |
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|||||||||||||| | ||||||| ||||||||||||||| ||||||||| ||| |||| |||||| |||||| |
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| T |
40304521 |
tgagagtatgttagtgactaaattaatagtaagtggttaattataaggactgaattgataataagttattaaaa |
40304448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 48466084 - 48466047
Alignment:
| Q |
107 |
agagtatgttagggtctaaattgatagtaagtggttaa |
144 |
Q |
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|||||||||||||| ||||||||||||||||| ||||| |
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| T |
48466084 |
agagtatgttagggactaaattgatagtaagttgttaa |
48466047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 6556679 - 6556607
Alignment:
| Q |
106 |
gagagtatgttagggtctaaattgatagtaagtggtt-aatataaggaccaaatcgatagtaagtttttaaaa |
177 |
Q |
| |
|
||||||||| ||| | |||||||||||||||| |||| ||||||| ||||| | ||||||||||| |||||| |
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| T |
6556679 |
gagagtatgctagagactaaattgatagtaagcggttaaatataaaaaccaagttgatagtaagttgttaaaa |
6556607 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 38833777 - 38833842
Alignment:
| Q |
113 |
tgttagggtctaaattgatagtaagtggtt-aatataaggaccaaatcgatagtaagtttttaaaa |
177 |
Q |
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|||||||| ||||||||||| ||||||||| || |||| || ||||| |||||||| ||||||||| |
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| T |
38833777 |
tgttagggactaaattgataataagtggttaaacataaagatcaaattgatagtaaatttttaaaa |
38833842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 7213953 - 7213885
Alignment:
| Q |
110 |
gtatgttagggtctaaattgatagtaagtggttaa-tataaggaccaaatcgatagtaagtttttaaaa |
177 |
Q |
| |
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|||||||| || ||||||||||||||| || || | |||||||| ||||| ||||||||||| |||||| |
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| T |
7213953 |
gtatgttaaggactaaattgatagtaaatgattgactataaggatcaaattgatagtaagttattaaaa |
7213885 |
T |
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