View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3578_low_3 (Length: 585)
Name: NF3578_low_3
Description: NF3578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3578_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 361 - 578
Target Start/End: Complemental strand, 32135539 - 32135322
Alignment:
| Q |
361 |
gaatctcttctgtacatgaagcaagtagcaatagtaagaaaacgcacatgcaatcaaagattcactactactgtctactccacttcatcaaatcatatcc |
460 |
Q |
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| T |
32135539 |
gaatctcttctgtacatgaagcaagtagcaatagtaagaaaacgcacatgcaatcaaagattcactactactgtctactccacttcatcaaatcatatcc |
32135440 |
T |
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| Q |
461 |
aaaaagtgaccaaaatatctttcacccttgtccccactacacactagtcctaccttccttccgacctacattacattactcactttcctcatgcttatca |
560 |
Q |
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| T |
32135439 |
aaaaagtgaccaaaatatctttcacccttgtccccactacacactagtcctaccttccttccgacctacattacattactcactttcctcatgcttatca |
32135340 |
T |
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| Q |
561 |
tgtgccatgcctatgctt |
578 |
Q |
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|||||||||||||||||| |
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| T |
32135339 |
tgtgccatgcctatgctt |
32135322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 281
Target Start/End: Complemental strand, 32135878 - 32135619
Alignment:
| Q |
22 |
gtgtccaaacagttccaggcatcccaaacaccaaaaagcaccagaaacttgttgttccactttaatctttgctatgaaacaccagaaaatcacatattta |
121 |
Q |
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| T |
32135878 |
gtgtccaaacagtttcgggcatcccaaacaccaaaaagcaccagaaacttgttgttccactttaatctttgctatgaaacaccagaaaatgacatattta |
32135779 |
T |
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| Q |
122 |
ccttcatcaatagttaactgccattaaatctacactttaaaaaacaccacttcaacaattaactgttgcggaataagaaatatcggcaattaactatttt |
221 |
Q |
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| T |
32135778 |
cctttatcaataattaactgccgttagatctacgctttaaaaaacaccacttcaacaattaactctcgcggaataagaaatatcggcaattaactattgt |
32135679 |
T |
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| Q |
222 |
cgggtaagttttttaacaatctccaaaatgggaacaacaattatcaaagcaccaactccc |
281 |
Q |
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| T |
32135678 |
caggtaagttttttaacaatctccaaaatgggaacaacaattatcaaagcaccaactccc |
32135619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 34824369 - 34824313
Alignment:
| Q |
87 |
tctttgctatgaaacaccagaaaatcacatatttaccttcatcaatagttaactgcc |
143 |
Q |
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| T |
34824369 |
tctttgctatgaaacatcaaaaaattacacatttactctcatcgatagttaactgcc |
34824313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 52085823 - 52085866
Alignment:
| Q |
79 |
cactttaatctttgctatgaaacaccagaaaatcacatatttac |
122 |
Q |
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| T |
52085823 |
cactttaacctttgccatgaaacaccagaaaattacatatttac |
52085866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 177 - 269
Target Start/End: Complemental strand, 24250017 - 24249925
Alignment:
| Q |
177 |
caattaactgttgcggaataagaaatatcggcaattaactattttcgggtaagttttttaacaatctccaaaatgggaacaacaattatcaaa |
269 |
Q |
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|||||||||| ||| || ||| ||| |||||| ||||||| | |||| | ||||||||| ||| ||| ||| |||||||| ||||||||||| |
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| T |
24250017 |
caattaactgccgcgaaacaaggaatttcggcagttaactactgtcggatgagttttttagcaaactcaaaagtgggaacatcaattatcaaa |
24249925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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