View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3578_low_6 (Length: 359)
Name: NF3578_low_6
Description: NF3578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3578_low_6 |
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| [»] chr1 (2 HSPs) |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 13616253 - 13615912
Alignment:
| Q |
16 |
caataactgtctatattgttaatctaggagataacttagcaaagttacatgatatagacttaggaggaaagctggagatcaaaggcttacaaaatatagg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13616253 |
caataactgtctatattgttaatctaggagataacttagcaaagttacatgatctagacttaggaggaaagctggagatcaaaggcttacaaaatatagg |
13616154 |
T |
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| Q |
116 |
tagtttatttgaagctcaagaagccactttaatggataaaagagacctcgatgaattattcttgtcatggcagcacaaagattcatctgtcaagacccct |
215 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13616153 |
tagtttatttgaagctcaagaagccaatttaatggataaaaaagacctcgatgaattattcttgtcatggcagcacaaagattcatctgtcaagacccct |
13616054 |
T |
|
| Q |
216 |
attattagtgatgatcaagtacttgaagtgcttcacctcatacaaatctcaagagcttgaaaatatattcttacaaaggattatgcttctcaagttggat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13616053 |
attattagtgatgatcaagtacttgaagtgcttcacctc-tccaaatctcaagagcttgaaaatatattcttacaaaggattatgcttctcaagttggat |
13615955 |
T |
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| Q |
316 |
cagaactcttagtaatttagttactcttaaagttaaggattgc |
358 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13615954 |
cagaactcatagtaatttagttactcttaaagttaaggattgc |
13615912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 20297129 - 20297217
Alignment:
| Q |
93 |
atcaaaggcttacaaaatataggtagtttatttgaagctcaagaagccactttaatggataaaagagacctcgatgaattattcttgtc |
181 |
Q |
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| T |
20297129 |
atcaaaggcttaaaagatgttggcagtatatctgaagctcaagaagccaatttgatgggtaaaaaagaccttcatgaattatgcttgtc |
20297217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 41 - 359
Target Start/End: Original strand, 7582205 - 7582524
Alignment:
| Q |
41 |
aggagataacttagcaaagttacatgatatagacttaggaggaaagctggagatcaaaggcttacaaaatataggtagtttatttgaagctcaagaagcc |
140 |
Q |
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|||| ||| |||||| |||||| |||| || |||||||||||||||||||||||| |||||||| |||| | |||||||||| |||||||||||||||| |
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| T |
7582205 |
aggacatagcttagcggagttacgtgatctaaacttaggaggaaagctggagatcagaggcttaccaaatgtcggtagtttatctgaagctcaagaagcc |
7582304 |
T |
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| Q |
141 |
actttaatggataaaagagacctcgatgaattattcttgtcatggcagcacaaagattcatctgtcaagacccctattattagtgatgatcaagtacttg |
240 |
Q |
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| || |||| ||||| ||||||||||||||||| |||||||||| |||||| ||||||||||| |||||| ||||||||||||| ||||||||||||| |
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| T |
7582305 |
aacttgatgggtaaaaaagacctcgatgaattatgcttgtcatggttgcacaatgattcatctgttaagaccactattattagtgacgatcaagtacttg |
7582404 |
T |
|
| Q |
241 |
aagtgcttc-acctcatacaaatctcaagagcttgaaaatatattcttacaaaggattatgcttctcaagttggatcagaactcttagtaatttagttac |
339 |
Q |
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||||||||| |||||| |||||||||||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
7582405 |
aagtgcttcaacctcacacaaatctcaagagcttgaaaatagatttttacaaaggtttatgcttcccaagttggatcagaactcttggtaatttagttac |
7582504 |
T |
|
| Q |
340 |
tcttaaagttaaggattgca |
359 |
Q |
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|||| || |||||| ||||| |
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| T |
7582505 |
tcttgaaattaagggttgca |
7582524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 41 - 349
Target Start/End: Complemental strand, 7099041 - 7098732
Alignment:
| Q |
41 |
aggagataacttagcaaagttacatgatatagacttaggaggaaagctggagatcaaaggcttacaaaatataggtagtttatttgaagctcaagaagcc |
140 |
Q |
| |
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|||| ||| ||||||| |||||| |||| || | |||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| |||||||| |
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| T |
7099041 |
aggacatagcttagcagagttacgtgatctaaatttaggaggaaagctggagatcaaaggcttacaaaatgttggtagtttatctgaagctaaagaagcc |
7098942 |
T |
|
| Q |
141 |
actttaatggataaaagagacctcgatgaattattcttgtcatggcagcacaaagattcatctgtcaagacccctattattagtgatgatcaagtacttg |
240 |
Q |
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| |||||||| ||||| ||||||||||||||||| |||||||||| || ||| || |||||||||| ||| |||| ||||||||||||||| ||| |
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| T |
7098941 |
aatttaatgggtaaaaaagacctcgatgaattatgcttgtcatggaagggtggtgatacacctgtcaagactcctgttatcagtgatgatcaagtaattg |
7098842 |
T |
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| Q |
241 |
aagtgcttca-cctcatacaaatctcaagagcttgaaaatatattcttacaaaggattatgcttctcaagttggatcagaactcttagtaatttagttac |
339 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7098841 |
aagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggatcagaactcttagtaatttagttac |
7098742 |
T |
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| Q |
340 |
tcttaaagtt |
349 |
Q |
| |
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|||| ||||| |
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| T |
7098741 |
tcttgaagtt |
7098732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 73 - 359
Target Start/End: Complemental strand, 17982511 - 17982225
Alignment:
| Q |
73 |
acttaggaggaaagctggagatcaaaggcttacaaaatataggtagtttatttgaagctcaagaagccactttaatggataaaagagacctcgatgaatt |
172 |
Q |
| |
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||||||||||||| ||||| |||| || || ||||||| | ||||||||| ||||| | ||||||| | ||| || | ||||| ||||||| ||||||| |
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| T |
17982511 |
acttaggaggaaaactggaaatcagagcct-acaaaatgtcagtagtttatctgaagttgaagaagcaaattttataggtaaaaaagacctcaatgaatt |
17982413 |
T |
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| Q |
173 |
attcttgtcatggcagcacaaagattcatctgtcaagacccctattattagtgatgatcaagtacttgaagtgcttca-cctcatacaaatctcaagagc |
271 |
Q |
| |
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|| | ||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| | |||||| ||| || |
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| T |
17982412 |
atgcctgtcatggcggcaccaaggttcatctgtcaagacccctattattagtgatgatcgtgtatttgaagtgcttcaacctcacagaaatcttaagggc |
17982313 |
T |
|
| Q |
272 |
ttgaaaatatattcttacaaaggattatgcttctcaagttggatcagaactcttagtaatttagttactcttaaagttaaggattgca |
359 |
Q |
| |
|
||||||||||||| |||| |||||||||||||| |||||||||||||||||||||| |||||| ||||||||| ||||||||||||| |
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| T |
17982312 |
ttgaaaatatattattaccaaggattatgcttcccaagttggatcagaactcttagcaatttacttactcttattgttaaggattgca |
17982225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 280
Target Start/End: Original strand, 17418809 - 17418883
Alignment:
| Q |
207 |
aagacccctattattagtgatgatcaagtacttgaagtgcttc-acctcatacaaatctcaagagcttgaaaata |
280 |
Q |
| |
|
|||||||||||| |||||| ||| ||| ||||||||||||||| |||||| ||||||||||| ||||||||||| |
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| T |
17418809 |
aagacccctattgttagtgctgagcaactacttgaagtgcttcaacctcactcaaatctcaagtgcttgaaaata |
17418883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 30243019 - 30243086
Alignment:
| Q |
214 |
ctattattagtgatgatcaagtacttgaagtgcttc-acctcatacaaatctcaagagcttgaaaata |
280 |
Q |
| |
|
|||| ||||||| ||| ||||||||||||||||||| |||||| ||||||||||| ||||||||||| |
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| T |
30243019 |
ctataattagtgctgagcaagtacttgaagtgcttcaacctcactcaaatctcaagtgcttgaaaata |
30243086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 359
Target Start/End: Complemental strand, 29871642 - 29871496
Alignment:
| Q |
214 |
ctattattagtgatgatcaagtacttgaagtgcttca-cctcatacaaatctcaagagcttgaaaatatattcttacaaaggattatgcttctcaagttg |
312 |
Q |
| |
|
|||| ||||||| ||| |||||||| |||| |||||| ||||| |||||||||| |||||| |||| ||| || ||||||||| || ||||||| |
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| T |
29871642 |
ctataattagtgctgagcaagtactcgaagagcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttg |
29871543 |
T |
|
| Q |
313 |
gatcagaactcttagtaatttagttactcttaaagttaaggattgca |
359 |
Q |
| |
|
||| | | ||||||||||||| || |||||||| || ||||||||| |
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| T |
29871542 |
gataattattcttagtaatttaatttctcttaaacttgaggattgca |
29871496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 343
Target Start/End: Complemental strand, 30399517 - 30399391
Alignment:
| Q |
218 |
tattagtgatgatcaagtacttgaagtgcttca-cctcatacaaatctcaagagcttgaaaatatattcttacaaaggattatgcttctcaagttggatc |
316 |
Q |
| |
|
|||||||| | | |||||||| ||||||||||| ||||| ||||||||||| ||||||||||| ||| || | ||||||| || |||||||||| |
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| T |
30399517 |
tattagtgctcagcaagtactcgaagtgcttcaacctcactcaaatctcaagtgcttgaaaataaattactatgacggattatcattaccaagttggata |
30399418 |
T |
|
| Q |
317 |
agaactcttagtaatttagttactctt |
343 |
Q |
| |
|
| | |||||||||||||||| ||||| |
|
|
| T |
30399417 |
attattcttagtaatttagtttctctt |
30399391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 343
Target Start/End: Original strand, 30714074 - 30714211
Alignment:
| Q |
207 |
aagacccctattattagtgatgatcaagtacttgaagtgcttca-cctcatacaaatctcaagagcttgaaaatatattcttacaaaggattatgcttct |
305 |
Q |
| |
|
||||||||| || |||||| ||| |||||||| |||| |||||| ||||| |||||||||| |||||| |||| ||| || ||||||||| || |
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| T |
30714074 |
aagacccctgttgttagtgctgagcaagtactcgaagagcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcattac |
30714173 |
T |
|
| Q |
306 |
caagttggatcagaactcttagtaatttagttactctt |
343 |
Q |
| |
|
|||||||||| | | |||||||||||||||| ||||| |
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|
| T |
30714174 |
caagttggataattattcttagtaatttagtttctctt |
30714211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 343
Target Start/End: Complemental strand, 30749093 - 30748969
Alignment:
| Q |
220 |
ttagtgatgatcaagtacttgaagtgcttc-acctcatacaaatctcaagagcttgaaaatatattcttacaaaggattatgcttctcaagttggatcag |
318 |
Q |
| |
|
|||||| ||| ||||||||||||||||||| |||||| |||||||||| |||||| |||| ||| || ||||||||| || |||||||||| | |
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| T |
30749093 |
ttagtgctgagcaagtacttgaagtgcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataat |
30748994 |
T |
|
| Q |
319 |
aactcttagtaatttagttactctt |
343 |
Q |
| |
|
| ||||||||||||| || ||||| |
|
|
| T |
30748993 |
tattcttagtaatttaatttctctt |
30748969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 26706885 - 26706817
Alignment:
| Q |
117 |
agtttatttgaagctcaagaagccactttaatggataaaagagacctcgatgaattattcttgtcatgg |
185 |
Q |
| |
|
||||||| ||||||||||||||||| ||| |||| |||| | ||||||| |||||| |||||||||| |
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|
| T |
26706885 |
agtttatctgaagctcaagaagccaatttgatggggaaaaaaaacctcgaaaaattatgcttgtcatgg |
26706817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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