View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3578_low_7 (Length: 336)
Name: NF3578_low_7
Description: NF3578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3578_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 37632866 - 37633170
Alignment:
| Q |
16 |
accaaaaacatgttgctaacccacgaatacatgaacctcaaaacaaccatgaacaccctaggactcaaacaaacaaaaatagtagcaaacataacttact |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
37632866 |
accaaaaacatgttgctaacccacgaatacatgaacctcaaaacaaccatgaacaccctaggactcaaacaaacaaaaatagtagcaaatataacttttt |
37632965 |
T |
|
| Q |
116 |
gctgtacaaaaacaccaccaaaaccagaaaattagcagcatagcagaaatagcagcaaatcaaaacttgcggctgcaccaaaacacctttaggactgaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37632966 |
gctgtacaaaaacaccaccaaaaccagaaaattaacagcatagcagaaatagcagcaaatcaaaacttgtggctgcaccaaaacacctttaggactgaaa |
37633065 |
T |
|
| Q |
216 |
tgcggtgtgcatctttgttattttcgtatgtacctatattttcatacaaattagagtacatttgtttaacatttcagcgcatggcattttttgaactagt |
315 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37633066 |
tgcggtgtgcatctttgatattttcgtatgtacctatattttcatacaaattagagtacatttgtttaacatttcagcgcttggcattttttgaactagt |
37633165 |
T |
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| Q |
316 |
taaat |
320 |
Q |
| |
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||||| |
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| T |
37633166 |
taaat |
37633170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 45220588 - 45220676
Alignment:
| Q |
16 |
accaaaaacatgttgctaacccacgaatacatgaacctcaaaacaaccatgaacaccctaggactcaaacaaacaaaaatagtagcaaa |
104 |
Q |
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| T |
45220588 |
accaaaaacaggttgctaactcaccaatacatgaaccataaaacaaccatggacaccctaggactcaaacaaacaaaaatagcagcaaa |
45220676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 28697429 - 28697503
Alignment:
| Q |
12 |
acagaccaaaaacatgttgctaacccacgaatacatgaacctcaaaacaaccatgaacaccctaggactcaaaca |
86 |
Q |
| |
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|||||||||||||| |||||||| ||| |||||| |||||| |||||||||| | ||||| ||||||||||||| |
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| T |
28697429 |
acagaccaaaaacaggttgctaattcaccaatacaagaaccttaaaacaaccacggacaccataggactcaaaca |
28697503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 17 - 163
Target Start/End: Original strand, 18329737 - 18329884
Alignment:
| Q |
17 |
ccaaaaacatgttgctaacccacgaatacatgaacctcaaaacaaccatgaacaccctaggactcaaacaaacaaaaatagtagcaaa-cataacttact |
115 |
Q |
| |
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||||||||| ||||||||| ||| ||||||||||||| |||| | |||| ||||| ||||||| ||||||||||||||| |||||| | ||||| || |
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| T |
18329737 |
ccaaaaacaggttgctaactcaccaatacatgaaccttaaaagcaacatggacaccataggacttgaacaaacaaaaatagcagcaaattagaactttct |
18329836 |
T |
|
| Q |
116 |
gctgtacaaaaacaccaccaaaaccagaaaattagcagcatagcagaa |
163 |
Q |
| |
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|||| || ||||| ||||||||| ||||||||||||||||||||| |
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| T |
18329837 |
gctgcaccaaaaccccaccaaaagtgtaaaattagcagcatagcagaa |
18329884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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