View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3578_low_8 (Length: 314)
Name: NF3578_low_8
Description: NF3578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3578_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 27 - 174
Target Start/End: Complemental strand, 41760873 - 41760725
Alignment:
| Q |
27 |
agcatgatcaaaagaaagaagatcatgg-ttttgttgcttaaatcaaaccatgattaaatgccgtctagcatcaattctaagatcttctttcatctttct |
125 |
Q |
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| T |
41760873 |
agcatgatcaaaagaaagaagatcatgggttttgttgcttaaatcaaaccatgattaaatgccgtctagcatcaattctaagatcttctttcatctttct |
41760774 |
T |
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| Q |
126 |
aatgaaatcttcaaattttttgtttaactcttcagtacttagcacacaa |
174 |
Q |
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| T |
41760773 |
aatgaaatcttcaaattttttgtttaactcttctgtacttagcacacaa |
41760725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 41795689 - 41795516
Alignment:
| Q |
1 |
atttaatggatgcatacatctaaaatagcatgatcaaaagaaagaagatcatggtt--ttgttgcttaaatcaaaccatgattaaatgccgtctagcatc |
98 |
Q |
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| T |
41795689 |
atttaatggatgcatacatctaaaatagcatgatcaaaagaaagaagatcatggttgctgtttacttaaatcaaaccatgactaaatgccgtctagcatc |
41795590 |
T |
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| Q |
99 |
aattctaagatcttctttcatctttctaatgaaatcttcaaattttttgtttaactcttcagtacttagcacac |
172 |
Q |
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| T |
41795589 |
aattcttagatcttctttcatctttctaatgaaatcttcgaattttttgtttaactcttctgtacttaacacac |
41795516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 41760656 - 41760585
Alignment:
| Q |
243 |
aattagaatgtaatcaatttccgacaatttatctccatcttcatcatctgcatcaaatagttcaacttcttc |
314 |
Q |
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| T |
41760656 |
aattagaatgtaatcaatttccgacaatttatctccctcatcatcatgtgcatcaaatagttcaacttcttc |
41760585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 41795457 - 41795386
Alignment:
| Q |
243 |
aattagaatgtaatcaatttccgacaatttatctccatcttcatcatctgcatcaaatagttcaacttcttc |
314 |
Q |
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| T |
41795457 |
aattagaatgtaatcaatttccgaccctttatctccgtcttcatcatctgcatcaaatagttcaacttcttc |
41795386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 23507455 - 23507400
Alignment:
| Q |
115 |
ttcatctttctaatgaaatcttcaaattttttgtttaactcttcagtacttagcac |
170 |
Q |
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| T |
23507455 |
ttcatctttttaatgaagtcatcaaattttttgttcaactcctcagtgcttagcac |
23507400 |
T |
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