View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3579_high_1 (Length: 577)
Name: NF3579_high_1
Description: NF3579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3579_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 523; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 11 - 561
Target Start/End: Original strand, 2886122 - 2886672
Alignment:
| Q |
11 |
cacagaggcacattggtattggatagggattggagcgttaacaggatttgtgtttcttttcaacatattattcactgtggctctcacttaccttgatcgt |
110 |
Q |
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| T |
2886122 |
cacagaggcatattggtattggatagggattggagcattaacaggatttatgtttcttttcaacatattattcactgtggctctcacttaccttgatcgt |
2886221 |
T |
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| Q |
111 |
gagtaccttcgtttattgttatttaagtttcttatgcttatgcacacatttcattaactaacatgcatgatttttacagcatttgacaagccacaagcaa |
210 |
Q |
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| T |
2886222 |
gagtaccttcgtttattgttatttaagtttcttatgcttatgcgcacatttcataaactaacatgcatgatttttacagcatttgacaagccacaagcaa |
2886321 |
T |
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| Q |
211 |
caataaatgaagaatcagaagacagcacaacaaatggcactacccaagaagttgaattaccgcgtataggtgatctatctttttcataccactcgtgaaa |
310 |
Q |
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| T |
2886322 |
caataaatgaagaatcagaagacagcacaacaaatggcactacccaagaagttgaattaccacgtataggtgatctatctttttcataccactcgtgaaa |
2886421 |
T |
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| Q |
311 |
actcaatataaacatgctacttttatgtgtttgaactagttcattagtgatttataatgcattttgattttatttaatattatttgggtgtagtcttgat |
410 |
Q |
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| T |
2886422 |
actcaatataaacatgctacttttatgtgtttgaactagttcattagtgatttataatgcattttgattttatttaatattatttgggtgtagtcttgat |
2886521 |
T |
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| Q |
411 |
tattgttagggctgggatctcagttttctataatgatgttctttcatgcctcataatggctttagaatcttaacatatttgcaattgttatgcagcaagt |
510 |
Q |
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| T |
2886522 |
tattgttagggctgggatctcagttttctataatgatgttctttcatgcctcataatggctttagaatcttaacatatttgcaattgttatgcagcaagt |
2886621 |
T |
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| Q |
511 |
tcaggaggatcaaatggtgcggaccccagccaaagagagagaagaggaatg |
561 |
Q |
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| T |
2886622 |
tcaggaggatcaaatggtgcggaccctagccaaagagagagaagaggaatg |
2886672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 327
Target Start/End: Complemental strand, 2898298 - 2897983
Alignment:
| Q |
11 |
cacagaggcacattggtattggatagggattggagcgttaacaggatttgtgtttcttttcaacatattattcactgtggctctcacttaccttgatcgt |
110 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||| |
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| T |
2898298 |
cacagaggcatattggtattggatagggattggagcattaacaggatttatgtttcttttcaacatattattcactatggctctcactcaccttaatcgt |
2898199 |
T |
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| Q |
111 |
gagtaccttcgtttattgttatttaagtttcttatgcttatgcacacatttcattaactaacatgcatgatttttacagcatttgacaagccacaagcaa |
210 |
Q |
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| T |
2898198 |
gagtacattcattt-ttggtatttaagtttcttatggttatgcaaatatgccattgactaacatgcatgatttttacagcatttgacaagccacaagcaa |
2898100 |
T |
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| Q |
211 |
caataaatgaagaatcagaagacagcacaacaaatggcactacccaagaagttgaattaccgcgtataggtgatctatctttttcataccactcgtgaaa |
310 |
Q |
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| T |
2898099 |
aaataaatgaagaatcagaagacagcataacaaatggcactctccaagaagttgaattaccgcgcataggttatgaatctttttcataccattcatgaaa |
2898000 |
T |
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| Q |
311 |
actcaatataaacatgc |
327 |
Q |
| |
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| T |
2897999 |
actcaatataaacatgc |
2897983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 115
Target Start/End: Original strand, 2876099 - 2876192
Alignment:
| Q |
22 |
attggtattggatagggattggagcgttaacaggatttgtgtttcttttcaacatattattcactgtggctctcacttaccttgatcgtgagta |
115 |
Q |
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| T |
2876099 |
attggtattggataggagttggtgcattaataggatttattttccttaccaactttttatacattatcgctctcacttaccttgatcgtgagta |
2876192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 2876267 - 2876307
Alignment:
| Q |
188 |
agcatttgacaagccacaagcaacaataaatgaagaatcag |
228 |
Q |
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| T |
2876267 |
agcacttgacaagccacaagccacaataaaagaagaatcag |
2876307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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