View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3579_high_10 (Length: 304)
Name: NF3579_high_10
Description: NF3579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3579_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 2564646 - 2564939
Alignment:
| Q |
1 |
acatactaggtaacaatcccatgaagatgtcatacatggtgggatatggaagtaaatatccaaagcaattacatcacagaggttcttccatcccttcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2564646 |
acatactaggtaacaatcccatgaagatgtcatacatggtgggatatggaagtaaatatccaaagcaattacatcacagaggttcttccatcccttcaat |
2564745 |
T |
|
| Q |
101 |
caaacttcaccagaccaaagtgggttgcaatgatggttacacagattatttctattcctctaatccaaatcctaatattcatgtgggtgctattgttgga |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2564746 |
caaagttcaccagaccaaagtgggttgcaatgatggttacacagattatttctattcctctaatccaaatcctaatattcatgtgggtgctatagttgga |
2564845 |
T |
|
| Q |
201 |
ggccctgattttaatgaccaatttaatgatgcaagatctgattactctcattctgaacctactacttatataaatgctgctttcacaggttctg |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
2564846 |
ggccctgattttaatgaccaatttaatgatgcaagatctgattactctcattctgaacctactacttatatgaatgctgctttcataggttctg |
2564939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 2574540 - 2574822
Alignment:
| Q |
1 |
acatactaggtaacaatcccatgaagatgtcatacatggtgggatatggaagtaaatatccaaagcaattacatcacagaggttcttccatcccttcaat |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2574540 |
acatactaggaaacaatcccatgaagatgtcatatatggtgggatatgggagtaaatatccaaaacaattacatcacagaggttcttccatcccttcaat |
2574639 |
T |
|
| Q |
101 |
caaacttcaccagaccaaagtgggttgcaatgatggttacacagattatttctattcctctaatccaaatcctaatattcatgtgggtgctattgttgga |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| | | | ||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2574640 |
caaagttcaccagaccaaagtgggttgcaatgatggccaatcgaactatttctcatcatctaatccaaatcctaatattcatgtgggtgctattgttgga |
2574739 |
T |
|
| Q |
201 |
ggccctgattttaatgaccaatttaatgatgcaagatctgattactctcattctgaacctactacttatataaatgctgcttt |
283 |
Q |
| |
|
|| || ||| ||||||||||| ||||||||||||||||||||||||||| | |||||||| || ||||| ||||||||||| |
|
|
| T |
2574740 |
ggaccaaattctaatgaccaatacaatgatgcaagatctgattactctcatgcagaacctaccacctatatgaatgctgcttt |
2574822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University