View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3579_high_13 (Length: 252)

Name: NF3579_high_13
Description: NF3579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3579_high_13
NF3579_high_13
[»] chr3 (2 HSPs)
chr3 (1-236)||(30888995-30889229)
chr3 (5-46)||(3837287-3837328)
[»] chr1 (3 HSPs)
chr1 (48-161)||(35820055-35820168)
chr1 (111-162)||(23395110-23395161)
chr1 (111-164)||(35819780-35819833)
[»] chr7 (4 HSPs)
chr7 (48-157)||(2407328-2407437)
chr7 (103-148)||(41415838-41415883)
chr7 (110-160)||(40352638-40352688)
chr7 (108-161)||(1780559-1780612)
[»] chr8 (5 HSPs)
chr8 (5-47)||(18896549-18896591)
chr8 (108-160)||(18896788-18896840)
chr8 (107-161)||(18896628-18896682)
chr8 (112-161)||(30491470-30491520)
chr8 (112-164)||(11873508-11873560)
[»] chr6 (1 HSPs)
chr6 (107-149)||(8382248-8382290)
[»] chr5 (1 HSPs)
chr5 (48-158)||(17483164-17483275)
[»] chr4 (1 HSPs)
chr4 (52-138)||(51355995-51356081)
[»] scaffold0007 (1 HSPs)
scaffold0007 (104-160)||(201306-201362)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 30889229 - 30888995
Alignment:
Q  1 cacattaagtgatgtgggtgacacacatgcattgatttggtcaaaatggccaaaagtgcaaaatggagtaaacttagaggctgatttgctattgnnnnnn 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||          
T  30889229 cacattaagtgatgtgggtgacacgcatgcattgatttggtcaaaatggccaaaagtgcaaaatggagtaaacttagaggctgatttgttattgtttttt 30889130  T
Q  101 natagagggccaaaatcgcaagattgtgacacttaggaagccaaaactataattaagcctataagaattcaaatctctaacattccatcgtcttaaactc 200  Q
     |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||    
T  30889129 -atagggggccaaaatcgcaagactgtgacacttaggaagccaaaactataattaaacctataagagttcaaatctctaaccttccatcgtcttaaactc 30889031  T
Q  201 ttccgtcaaaatcaaaagaaatcatcccacaaatct 236  Q
    ||||||||||||||||||||||||||| ||||||||    
T  30889030 ttccgtcaaaatcaaaagaaatcatcctacaaatct 30888995  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 3837287 - 3837328
Alignment:
Q  5 ttaagtgatgtgggtgacacacatgcattgatttggtcaaaa 46  Q
    |||||||||||||||| |||| ||||||||| ||||||||||    
T  3837287 ttaagtgatgtgggtgccacatatgcattgacttggtcaaaa 3837328  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 161
Target Start/End: Original strand, 35820055 - 35820168
Alignment:
Q  48 ggccaaaagtgcaaaatggagtaaacttagagg-ctgatttgctattgnnnnnnnatagagggccaaaatcgcaagattgtgacacttaggaagccaaaa 146  Q
    |||||||||||||||| || |||||||||| || |||||||| ||||        |||| ||||||||||||||||||||||| |||||||  |||||||    
T  35820055 ggccaaaagtgcaaaaggg-gtaaacttagggggctgatttgttattatttttttatagggggccaaaatcgcaagattgtgatacttagggggccaaaa 35820153  T
Q  147 ctataattaagccta 161  Q
    ||  |||||||||||    
T  35820154 ctgcaattaagccta 35820168  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 23395161 - 23395110
Alignment:
Q  111 caaaatcgcaagattgtgacacttaggaagccaaaactataattaagcctat 162  Q
    ||||||||||||||||||| |||||||   ||||||||| ||||||||||||    
T  23395161 caaaatcgcaagattgtgatacttaggggaccaaaactacaattaagcctat 23395110  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 35819833 - 35819780
Alignment:
Q  111 caaaatcgcaagattgtgacacttaggaagccaaaactataattaagcctataa 164  Q
    ||||||||||||||||||| |||||||  |||||||||  ||||||||| ||||    
T  35819833 caaaatcgcaagattgtgatacttagggggccaaaactgaaattaagccaataa 35819780  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 2407437 - 2407328
Alignment:
Q  48 ggccaaaagtgcaaaatggagtaaacttaga-ggctgatttgctattgnnnnnnnatagagggccaaaatcgcaagattgtgacacttaggaagccaaaa 146  Q
    |||||||||||||||| || ||||||||||  |||||||||| |||||       |||| || |||||||||||||||||||| |||||||  |||||||    
T  2407437 ggccaaaagtgcaaaagggggtaaacttaggtggctgatttgttattgtttttt-ataggggaccaaaatcgcaagattgtgatacttagggggccaaaa 2407339  T
Q  147 ctataattaag 157  Q
    ||| |||||||    
T  2407338 ctacaattaag 2407328  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 41415838 - 41415883
Alignment:
Q  103 tagagggccaaaatcgcaagattgtgacacttaggaagccaaaact 148  Q
    ||||||||||||||||||||||||||| ||||| || |||||||||    
T  41415838 tagagggccaaaatcgcaagattgtgatacttaagaggccaaaact 41415883  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 40352688 - 40352638
Alignment:
Q  110 ccaaaatcgcaagattgtgacacttaggaagccaaaactataattaagcct 160  Q
    |||||||||||||||||||| |||||||  | |||||||| ||||||||||    
T  40352688 ccaaaatcgcaagattgtgatacttagggggtcaaaactacaattaagcct 40352638  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 1780559 - 1780612
Alignment:
Q  108 ggccaaaatcgcaagattgtgacacttaggaagccaaaactataattaagccta 161  Q
    |||||||||||||||||||||| || ||||  || ||||||| |||||||||||    
T  1780559 ggccaaaatcgcaagattgtgaaacatagggggcaaaaactacaattaagccta 1780612  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 18896591 - 18896549
Alignment:
Q  5 ttaagtgatgtgggtgacacacatgcattgatttggtcaaaat 47  Q
    |||||||||||||||| |||||||||||||| |||||||||||    
T  18896591 ttaagtgatgtgggtgccacacatgcattgacttggtcaaaat 18896549  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 18896788 - 18896840
Alignment:
Q  108 ggccaaaatcgcaagattgtgacacttaggaagccaaaactataattaagcct 160  Q
    |||||||||| ||||||||||| |||||||| |||||||||  ||||||||||    
T  18896788 ggccaaaatcacaagattgtgatacttaggaggccaaaactgcaattaagcct 18896840  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 18896628 - 18896682
Alignment:
Q  107 gggccaaaatcgcaagattgtgacacttaggaagccaaaactataattaagccta 161  Q
    ||||||||||||||||||||||| |||||||  |||||||||  ||| |||||||    
T  18896628 gggccaaaatcgcaagattgtgatacttagggggccaaaactgcaatcaagccta 18896682  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 30491520 - 30491470
Alignment:
Q  112 aaaatcgcaagattgtgacacttaggaagcc-aaaactataattaagccta 161  Q
    |||||||||| ||||||| |||||||||| | |||||||||||||||||||    
T  30491520 aaaatcgcaaaattgtgatacttaggaaggctaaaactataattaagccta 30491470  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 11873560 - 11873508
Alignment:
Q  112 aaaatcgcaagattgtgacacttaggaagccaaaactataattaagcctataa 164  Q
    |||||||||||||||||| | |||||| |||||||||  |||||||| |||||    
T  11873560 aaaatcgcaagattgtgatatttaggaggccaaaactgcaattaagcatataa 11873508  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 8382290 - 8382248
Alignment:
Q  107 gggccaaaatcgcaagattgtgacacttaggaagccaaaacta 149  Q
    ||||||||||||||||||||||| ||||||| |||||||||||    
T  8382290 gggccaaaatcgcaagattgtgatacttagggagccaaaacta 8382248  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 158
Target Start/End: Complemental strand, 17483275 - 17483164
Alignment:
Q  48 ggccaaaagtgcaaaatggagtaaacttagagg-ctgatttgctattgnnnnnnnatagagggccaaaatcgcaagattgtgacacttaggaagccaaaa 146  Q
    |||||||||| ||||| ||||||||||||| || |||||||| |||||       |||||||||||||||| ||||||||||| || |||    ||||||    
T  17483275 ggccaaaagtacaaaagggagtaaacttaggggactgatttgttattgtttttttatagagggccaaaatcacaagattgtgatacatagaggaccaaaa 17483176  T
Q  147 ctataattaagc 158  Q
    ||| ||||||||    
T  17483175 ctagaattaagc 17483164  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 51355995 - 51356081
Alignment:
Q  52 aaaagtgcaaaatggagtaaacttagaggctgatttgctattgnnnnnnnatagagggccaaaatcgcaagattgtgacacttagga 138  Q
    |||||||||||| || |||||||||  |||||| ||| |||||       |||| ||||||||||||||||||||||| || |||||    
T  51355995 aaaagtgcaaaagggggtaaacttaagggctgacttgttattgtttttttatagggggccaaaatcgcaagattgtgaaacatagga 51356081  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 201362 - 201306
Alignment:
Q  104 agagggccaaaatcgcaagattgtgacacttaggaagccaaaactataattaagcct 160  Q
    |||||| ||||||||||||||||||| |||||||  | |||||||  ||||||||||    
T  201362 agagggtcaaaatcgcaagattgtgatacttagggggtcaaaactgcaattaagcct 201306  T

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