View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3579_high_15 (Length: 249)
Name: NF3579_high_15
Description: NF3579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3579_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 4476686 - 4476903
Alignment:
| Q |
14 |
agaagtataacgcagtagacacaacgaaggccattgttagggtacaagacacaacccttggtaataactggtgttttggtttgaagatcttcttgtatgc |
113 |
Q |
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| T |
4476686 |
agaagtataacgcagtagacacaacgaaggccattgtgagggtacaagacacaacccttggtaataactggtgttttggtttgaagatcttcttgtatgc |
4476785 |
T |
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| Q |
114 |
aatttcaagagccacacacaccccatggatgaaaaagaaacacattgaatcccaacatggttcccaagcttcccatgtggccttttccctcttcatgtaa |
213 |
Q |
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| T |
4476786 |
aatttcaagagccacacacaccccatggatgaaaaagaaacacattgaatcccaacatggttcccaagcttcccatgtggccttctccctcttcatgtga |
4476885 |
T |
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| Q |
214 |
tagaagatcaaatcatgc |
231 |
Q |
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| T |
4476886 |
tagaagatcaaatcatgc |
4476903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 191
Target Start/End: Original strand, 55653493 - 55653658
Alignment:
| Q |
26 |
cagtagacacaacgaaggccattgttagggtacaagacacaacccttggtaataactggtgttttggtttgaagatcttcttgtatgcaatttcaagagc |
125 |
Q |
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| T |
55653493 |
cagtagacaccacaaaaaccattgtaagtatacaagacacaacccttggcaataattcacgttttggttcaaataccttcttatacgcaatttgaagagc |
55653592 |
T |
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| Q |
126 |
cacacacaccccatggatgaaaaagaaacacattgaatcccaacatggttcccaagcttcccatgt |
191 |
Q |
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| T |
55653593 |
caaacacaccccatggatgaagaaaaagcacattgaatcccaacatggttcccaagcttcccatgt |
55653658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 192
Target Start/End: Original strand, 55662070 - 55662220
Alignment:
| Q |
43 |
gccattgttagggtacaagacacaacccttggtaataactggtgttttggtttgaagatcttcttgtatgcaatttcaagagccacacacacccc-atgg |
141 |
Q |
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| T |
55662070 |
gccattgtaagtatacaagacacaacccttggcaataattcacctttcggtttgaataccttcttatattcaatttgaagagccaaacacacccccatgg |
55662169 |
T |
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| Q |
142 |
atgaaaaagaaacacattgaatcccaacatggttcccaagcttcccatgtg |
192 |
Q |
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| T |
55662170 |
atgaagaagaagcacattgaatcccaatatggctcccaagcctcccatgtg |
55662220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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