View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3579_high_16 (Length: 241)
Name: NF3579_high_16
Description: NF3579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3579_high_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 32604120 - 32604340
Alignment:
| Q |
18 |
agtacgataatgttttcctaagattatacagtacttgtttttctgagttctttcatatcaa-gttattccataacaatgatttaaccatttttacaacat |
116 |
Q |
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| T |
32604120 |
agtacgataatgttttcccaagattatac-----ttgtttttctgagttctttcatatcaaagttattccataacaatgatttaaccatttttacaacat |
32604214 |
T |
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| Q |
117 |
ggatgtttgaaccaaatatgagtaagttat--ctacatggtttgtttgccactctaattcacattaaactcattctatataaccaaattatcaaactttt |
214 |
Q |
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| T |
32604215 |
ggatgtttgaaccaaatatgagtaaggtattccaacatggat-gtttgccactctaattcacattaaactcattctatataaccaaattatcaaactttt |
32604313 |
T |
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| Q |
215 |
caaccacaaaaccattagaataaaact |
241 |
Q |
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| T |
32604314 |
caaccacaaaaccattagaataaaact |
32604340 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 11811459 - 11811504
Alignment:
| Q |
107 |
tttacaacatggatgtttgaaccaaatatgagtaagttatctacat |
152 |
Q |
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| T |
11811459 |
tttacaacatggatctttgaaccaaatgtgagcaagtcatctacat |
11811504 |
T |
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