View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3579_high_17 (Length: 240)
Name: NF3579_high_17
Description: NF3579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3579_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 43436785 - 43436853
Alignment:
| Q |
6 |
gtccaaaaatattacaaacactttccatctatctatctgccaccccacgcgcaatcatccatcaacaac |
74 |
Q |
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| T |
43436785 |
gtccaaacaaattacaaacactttccatctatctatctgccaccccacgcgcaatcatccatcaacaac |
43436853 |
T |
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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 43436963 - 43437011
Alignment:
| Q |
176 |
gcactatatcctctctttaaacaaacattcaccaccttattactctcat |
224 |
Q |
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| T |
43436963 |
gcactatatcctctctttaaacaaacattcaccaccttattactctcat |
43437011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 43436897 - 43436941
Alignment:
| Q |
118 |
ctcctgcttcttttctgtacaacattctcatgcttttgctaatac |
162 |
Q |
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| T |
43436897 |
ctcctgcttcttttctgtacaacattctcatgcttttgctaatac |
43436941 |
T |
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