View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3579_high_20 (Length: 222)
Name: NF3579_high_20
Description: NF3579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3579_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 30874197 - 30873989
Alignment:
| Q |
1 |
aaatcatggtcttggagatgtagttggtcgcaggccgaggggaagacctccgggctcaaagaacaaacctaaaccaccggtgatcatcacaagagagagt |
100 |
Q |
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| T |
30874197 |
aaatcatggtcttggagatgtagttggtcgcaggccgaggggaagacctccgggctcaaagaacaaacctaaaccaccggtgatcatcacaagagagagt |
30874098 |
T |
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| Q |
101 |
gcaaacacacttagggctcacatccttgaagtaagtagtggttgtgatgtgtttgactctgtggctacctatgcaagaaagcgtcaaagagggatctgtg |
200 |
Q |
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| T |
30874097 |
gcaaacacacttagggctcacatccttgaagtaagtagtggttgtgatgtgtttgactctgtggctacttatgcaagaaagcgtcaaagagggatctgtg |
30873998 |
T |
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| Q |
201 |
tccttagtg |
209 |
Q |
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||||||||| |
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| T |
30873997 |
tccttagtg |
30873989 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 40541519 - 40541580
Alignment:
| Q |
71 |
aaaccaccggtgatcatcacaagagagagtgcaaacacacttagggctcacatccttgaagt |
132 |
Q |
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|||||||||||||||||||| |||||||||| ||||| || || ||||| || |||||||| |
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| T |
40541519 |
aaaccaccggtgatcatcactcgagagagtgccaacactctcagagctcatattcttgaagt |
40541580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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