View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3579_high_21 (Length: 208)

Name: NF3579_high_21
Description: NF3579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3579_high_21
NF3579_high_21
[»] chr2 (11 HSPs)
chr2 (1-160)||(10340929-10341088)
chr2 (7-137)||(10352663-10352793)
chr2 (7-107)||(9291519-9291621)
chr2 (7-109)||(9066080-9066188)
chr2 (7-109)||(9320550-9320654)
chr2 (7-76)||(12012996-12013065)
chr2 (12-102)||(12019338-12019434)
chr2 (7-46)||(10335450-10335489)
chr2 (10-107)||(9274146-9274242)
chr2 (33-109)||(9061656-9061731)
chr2 (64-109)||(10371429-10371474)
[»] chr4 (1 HSPs)
chr4 (7-95)||(26574491-26574579)
[»] chr3 (1 HSPs)
chr3 (7-108)||(37462050-37462153)
[»] chr8 (1 HSPs)
chr8 (7-108)||(41967181-41967284)
[»] chr1 (1 HSPs)
chr1 (7-51)||(29453744-29453788)


Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 10341088 - 10340929
Alignment:
Q  1 attataaaattgaattcttatcatagaataaggattctctaattaccttgatgtatttacttttgtttgtgtatatgacaatgtgtgtatgctttatttc 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10341088 attataaaattgaattcttatcataggataaggattctctaattaccttgatgtatttacttttgtttgtgtatatgacaatgtgtgtatgctttatttc 10340989  T
Q  101 aaaagaaacnnnnnnngacaacaatgtatgctatgtggttttcaggataaggattcctaa 160  Q
    |||||||||       ||||||||||||||||||||||||| ||||||||||||||||||    
T  10340988 aaaagaaacaaaaaaagacaacaatgtatgctatgtggtttgcaggataaggattcctaa 10340929  T

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Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 137
Target Start/End: Complemental strand, 10352793 - 10352663
Alignment:
Q  7 aaattgaattcttatcatagaataaggattctctaattaccttgatgtatttacttttgtttgtgtatatgacaatgtgtgtatgctttatttcaaaaga 106  Q
    |||||||||||||||||||| ||||||||||||||||||| |||| || ||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  10352793 aaattgaattcttatcataggataaggattctctaattactttgacgtctttacctttgtttatgtatatgacaatgtgtgtatgctttatttcaaaaga 10352694  T
Q  107 aacnnnnnnngacaacaatgtatgctatgtg 137  Q
    |||       |||||||||||||||||||||    
T  10352693 aacaaaaaaagacaacaatgtatgctatgtg 10352663  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 9291621 - 9291519
Alignment:
Q  7 aaattgaattcttatcatagaataaggattctctaattaccttgatgtatttacttttgtttgtgtata--tgacaatgtgtgtatgctttatttcaaaa 104  Q
    ||||||||||||||| |||| | ||||||||||||||||| |||| || | ||| ||||||| ||||||  ||||||||||||||||||  || ||||||    
T  9291621 aaattgaattcttattataggacaaggattctctaattactttgaagtctctacctttgtttatgtatatgtgacaatgtgtgtatgctggatgtcaaaa 9291522  T
Q  105 gaa 107  Q
    |||    
T  9291521 gaa 9291519  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 9066080 - 9066188
Alignment:
Q  7 aaattgaattcttatcatagaataaggattctctaattaccttgatgtatttacttttgttt------gtgtatatgacaatgtgtgtatgctttatttc 100  Q
    |||||||| ||||||||||| |||| |||||||||||||| |||| || | ||| |||||||       ||||| ||||||||||||||||||| ||| |    
T  9066080 aaattgaagtcttatcataggataaagattctctaattactttgaagtttctacctttgtttatgtacatgtatttgacaatgtgtgtatgcttgattcc 9066179  T
Q  101 aaaagaaac 109  Q
    |||||||||    
T  9066180 aaaagaaac 9066188  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 9320654 - 9320550
Alignment:
Q  7 aaattgaattcttatcatagaataaggattctctaattaccttgatgtatttacttttgtttgtgtatatg--acaatgtgtgtatgctttatttcaaaa 104  Q
    |||||||||| |||| || | | |||||| |||||||||| |||| || | ||| |||||||  |||||||  ||||||||||||||||  |||||||||    
T  9320654 aaattgaatttttattatcggacaaggatactctaattactttgaagtctctacctttgtttacgtatatgtgacaatgtgtgtatgctggatttcaaaa 9320555  T
Q  105 gaaac 109  Q
    |||||    
T  9320554 gaaac 9320550  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 12012996 - 12013065
Alignment:
Q  7 aaattgaattcttatcatagaataaggattctctaattaccttgatgtatttacttttgtttgtgtatat 76  Q
    ||||||||||||||| |||| | ||||||||||||||||| |||| || | ||| ||||||| |||||||    
T  12012996 aaattgaattcttattataggacaaggattctctaattactttgaagtctctacctttgtttatgtatat 12013065  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 12019338 - 12019434
Alignment:
Q  12 gaattcttatcatagaataaggattctctaattaccttgatgtatttacttttgtttgtgtata------tgacaatgtgtgtatgctttatttcaa 102  Q
    |||||||||| |||| | ||||||||||||||||| |||| || | ||| ||||||| ||||||      ||||||||||||||||||| |||||||    
T  12019338 gaattcttattataggacaaggattctctaattactttgaagtctctacctttgtttatgtatatgtatttgacaatgtgtgtatgcttgatttcaa 12019434  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 10335489 - 10335450
Alignment:
Q  7 aaattgaattcttatcatagaataaggattctctaattac 46  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  10335489 aaattgaattcttatcataggatgaggattctctaattac 10335450  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 9274242 - 9274146
Alignment:
Q  10 ttgaattcttatcatagaataaggattctctaattaccttgatgtatttacttttgtttgtgtata--tgacaatgtgtgtatgctttatttcaaaagaa 107  Q
    |||||||||||| |||| | |||||||| |||||||| ||||   || ||| ||||||| ||||||  ||||||||||||||||| | ||||| ||||||    
T  9274242 ttgaattcttattataggacaaggattcactaattactttga---atctacctttgtttatgtatatgtgacaatgtgtgtatgcatgatttctaaagaa 9274146  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 9061656 - 9061731
Alignment:
Q  33 gattctctaattaccttgatgtatttacttttgtttgtgtatatg--acaatgtgtgtatgctttatttcaaaagaaac 109  Q
    |||||||||||||| ||||   || ||| ||||||| ||||||||  ||||||||||||||||  ||||||||||||||    
T  9061656 gattctctaattactttga---atctacctttgtttatgtatatgtgacaatgtgtgtatgctggatttcaaaagaaac 9061731  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 10371474 - 10371429
Alignment:
Q  64 tgtttgtgtatatgacaatgtgtgtatgctttatttcaaaagaaac 109  Q
    ||||| ||||| ||||||||||| ||||||| ||||||||||||||    
T  10371474 tgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaac 10371429  T

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Target: chr4 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 26574579 - 26574491
Alignment:
Q  7 aaattgaattcttatcatagaataaggattctctaattaccttgatgtatttacttttgtttgtgtatatgacaatgtgtgtatgcttt 95  Q
    |||||||||||||||||||| ||||||||||||||||||| |||| || |||||  |||||| |||||||| |||||||||||||||||    
T  26574579 aaattgaattcttatcataggataaggattctctaattactttgacgtctttaccgttgtttatgtatatggcaatgtgtgtatgcttt 26574491  T

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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 37462153 - 37462050
Alignment:
Q  7 aaattgaattcttatcatagaataaggattctctaattaccttgatgtatttacttttgtttgtgtata--tgacaatgtgtgtatgctttatttcaaaa 104  Q
    ||||||||||||| | |||| | ||||||||||||||||| |||| || | ||| ||||||| ||||||  ||||||||||||||||||  |||||||||    
T  37462153 aaattgaattcttgttataggacaaggattctctaattactttgaagtctctacctttgtttatgtatatgtgacaatgtgtgtatgctagatttcaaaa 37462054  T
Q  105 gaaa 108  Q
    ||||    
T  37462053 gaaa 37462050  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 41967181 - 41967284
Alignment:
Q  7 aaattgaattcttatcatagaataaggattctctaattaccttgatgtatttacttttgtttgtgt--atatgacaatgtgtgtatgctttatttcaaaa 104  Q
    ||||||||||||||| |||| ||||  ||||||||||||| | || |  ||||| ||||||| |||  || ||| ||||||||||||||  |||||||||    
T  41967181 aaattgaattcttattataggataactattctctaattacttcgaaggctttacctttgtttatgtacatgtgataatgtgtgtatgctggatttcaaaa 41967280  T
Q  105 gaaa 108  Q
    ||||    
T  41967281 gaaa 41967284  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 29453744 - 29453788
Alignment:
Q  7 aaattgaattcttatcatagaataaggattctctaattaccttga 51  Q
    ||||||||||||||| |||||| ||||||||||||||||| ||||    
T  29453744 aaattgaattcttattatagaacaaggattctctaattactttga 29453788  T

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