View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3579_high_3 (Length: 472)
Name: NF3579_high_3
Description: NF3579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3579_high_3 |
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| [»] scaffold0003 (4 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Complemental strand, 88714 - 88277
Alignment:
| Q |
19 |
ctctttactaagtgcggtgaagagacaaacacaacacataattgttattttaatcataatannnnnnnacaagtctgggctcaaatctatataatgtatg |
118 |
Q |
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| T |
88714 |
ctctttactaagtgcggtgaagagacaaacacaacacataattgttattttaatcataatatttttttacaagtctgggctcaaatctatataatgtatg |
88615 |
T |
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| Q |
119 |
tatgaagaatgtattataaattttaaattgataaaaacatacaatatttattacttgtaaaggggtgacaatatggttgaagttaccaagttagttaatg |
218 |
Q |
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| T |
88614 |
tatgaagaat---------attttaaattgataaaaacatacaatatttattacttgtaaaggggtgacaatatggttgaagttaccaagttagttaatg |
88524 |
T |
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| Q |
219 |
ttatgcttatctttcttaccctatttgttgttgcattgagtgatgacagtaagccgttttctagccttttcaaatctccattagtttactgcttacaaca |
318 |
Q |
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| T |
88523 |
ttatgcttatctttcttaccctatttgttgttgcattgagtgatgacagtaagccgttttctagccttttcaaatctccattagtttactgcttacaaca |
88424 |
T |
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| Q |
319 |
ttctgattgtcaagcatatgcatgtgaattaccatttaaaccagattgtcttatggtggaatatt---cccaattcgttggtctcgcttgtggctgtgtt |
415 |
Q |
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| T |
88423 |
ttctgattgtcaagcatatgaatgtgaattaccatttaaaccagattgtcttatggtggaatattctccccaattcgttgctctccgttgtggctgtgtt |
88324 |
T |
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| Q |
416 |
tgagaaatgtgaccgtaagttttcactaaaaaattccacgacctatg |
462 |
Q |
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| T |
88323 |
tgagaaatgtgaccgtaagttttcactaaaaaattccacgacctatg |
88277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 57 - 293
Target Start/End: Complemental strand, 104068 - 103832
Alignment:
| Q |
57 |
taattgttattttaatcataatannnnnnnacaagtctgggctcaaatctatataatgtatgtatgaagaatgtattataaattttaaattgataaaaac |
156 |
Q |
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| T |
104068 |
taattgttattttaatcataatatatttttccaagtccgagctcaaatctatataatgtatgtatgaagaatgtattataaattttaaattgataaaaac |
103969 |
T |
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| Q |
157 |
atacaatatttattacttgtaaaggggtgacaatatggttgaagttaccaagttagttaatgttatgcttatctttcttaccctatttgttgttgcattg |
256 |
Q |
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| T |
103968 |
atacaatatttattacttgtaaaggggagaaaatatggttgaagttaccaagttagttaatgttatgcttatctttcttaccctatttgttgttgcattg |
103869 |
T |
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| Q |
257 |
agtgatgacagtaagccgttttctagccttttcaaat |
293 |
Q |
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| T |
103868 |
agtaatgacagtaagcctttttctaaccttttcaaat |
103832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 95 - 293
Target Start/End: Complemental strand, 108709 - 108513
Alignment:
| Q |
95 |
gggctcaaatctatataatgtatgtatgaagaatgtattataaattttaaattgataaaaacatacaatatttattacttgtaaaggggtgacaatatgg |
194 |
Q |
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| T |
108709 |
gggctaaaatctatataatgtatgtatgaagatggtattataaattttaaattgataaa--catacaatatttattacttgtaaaggggagaaaatatgg |
108612 |
T |
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| Q |
195 |
ttgaagttaccaagttagttaatgttatgcttatctttcttaccctatttgttgttgcattgagtgatgacagtaagccgttttctagccttttcaaat |
293 |
Q |
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| T |
108611 |
ttgaagttaccaaattagttaatattatgcttatatttcttaccttatttgttgtagcattgagcattgacagtaagccgttttatatccttttcaaat |
108513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 306 - 462
Target Start/End: Complemental strand, 103571 - 103412
Alignment:
| Q |
306 |
actgcttacaacattctgattgtcaagcatatgcatgtgaattaccatttaaaccagattgtcttatggtggaata---ttcccaattcgttggtctcgc |
402 |
Q |
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| T |
103571 |
actgcttgcaacattctgattgtcaagcatatgcgtgtgaattaccttttaaaccagattgtcttatggtggaatatgctccccagttctttcgtcttgc |
103472 |
T |
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| Q |
403 |
ttgtggctgtgtttgagaaatgtgaccgtaagttttcactaaaaaattccacgacctatg |
462 |
Q |
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| T |
103471 |
ttgtggctgtgtttgagcaatgtgacagtaagttttcactaaaaaattccacgacctatg |
103412 |
T |
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