View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3579_high_5 (Length: 443)

Name: NF3579_high_5
Description: NF3579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3579_high_5
NF3579_high_5
[»] chr4 (3 HSPs)
chr4 (11-302)||(1038438-1038737)
chr4 (360-429)||(1038309-1038378)
chr4 (40-105)||(52973685-52973751)
[»] chr8 (3 HSPs)
chr8 (42-105)||(2621424-2621488)
chr8 (26-103)||(9552501-9552579)
chr8 (13-96)||(21019755-21019839)
[»] chr7 (1 HSPs)
chr7 (40-105)||(5034084-5034150)
[»] scaffold0036 (1 HSPs)
scaffold0036 (13-105)||(53059-53152)
[»] chr3 (1 HSPs)
chr3 (13-105)||(29697475-29697568)
[»] chr5 (1 HSPs)
chr5 (42-101)||(39963931-39963991)
[»] chr1 (1 HSPs)
chr1 (42-105)||(51370203-51370267)


Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 11 - 302
Target Start/End: Complemental strand, 1038737 - 1038438
Alignment:
Q  11 aatatcaaaagaaactttaatttcatcagtctattagttcgttagcctatttaaacatagatcaattacttgtttaaatatgttcaaa--tgaaataa-t 107  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |    
T  1038737 aatatcaaaagaaactttagtttcatcagtctattagttcgttagcctatttaaacatagatcaattacttgtttaaatatgttcaaaaatgaaataaat 1038638  T
Q  108 ttataaataggctagcaaatcatatcaaatgtttgaaaggttaaacccagacctgcaaaataagcttatgacagactatatatcagatttcgaccttaca 207  Q
    || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  1038637 ttttaaataggctagcaaatcatatcaaatgtttgaaaggttaaactcagacctgcaaaataagcttatgacagactatatatcagacttggaccttaca 1038538  T
Q  208 aagttaactaaacttaacctgtttggagtgatgtggtgttagagaatgactcgac----ctaagaatatgcgagttaaactctt-atgtaatttgaaagg 302  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    ||||||||||||||||||||||||| |||||||||||||||    
T  1038537 aagttaactaaacttaacctgtttggagtgatgtagtgttagaggatgactcgacctagctaagaatatgcgagttaaactcttaatgtaatttgaaagg 1038438  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 360 - 429
Target Start/End: Complemental strand, 1038378 - 1038309
Alignment:
Q  360 gtttatattttaatttcttgaataaatttcttactaaagaaaagttactcaatgcagaagatgtactaag 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1038378 gtttatattttaatttcttgaataaatttcttactaaagaaaagttactcaatgcacaagatgtactaag 1038309  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 52973751 - 52973685
Alignment:
Q  40 tctattagttcgttagcctatttaaacatagatca-attacttgtttaaatatgttcaaatgaaata 105  Q
    |||||||||||| ||| |||||| ||| ||||||| ||||||| |||||| |||||||||| |||||    
T  52973751 tctattagttcgctagtctattttaacttagatcacattacttatttaaagatgttcaaataaaata 52973685  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 2621424 - 2621488
Alignment:
Q  42 tattagttcgttagcctatttaaacatagatca-attacttgtttaaatatgttcaaatgaaata 105  Q
    |||||||||||||| |||||||||| ||||||| ||| ||| |||||||||||| | ||||||||    
T  2621424 tattagttcgttagactatttaaacttagatcatattgcttatttaaatatgttaatatgaaata 2621488  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 9552579 - 9552501
Alignment:
Q  26 tttaatttcatcagtctattagttcgttagcctatttaaacatagatca-attacttgtttaaatatgttcaaatgaaa 103  Q
    |||||| ||||  |||||||||||||||||  ||||||||| ||||||| |||  || |||||||||||||| ||||||    
T  9552579 tttaatctcattcgtctattagttcgttagtttatttaaacttagatcacattgtttatttaaatatgttcatatgaaa 9552501  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 21019839 - 21019755
Alignment:
Q  13 tatcaaaagaaactttaatttcatcagtctattagttcgttagcctatttaaacatagatca-attacttgtttaaatatgttca 96  Q
    |||||||||| | |||||||| ||   |||||||||||| ||| |||||||||| ||||||| ||| ||| |||||| |||||||    
T  21019839 tatcaaaagagagtttaatttaattgatctattagttcgctagtctatttaaacttagatcacattgcttatttaaagatgttca 21019755  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 105
Target Start/End: Complemental strand, 5034150 - 5034084
Alignment:
Q  40 tctattagttcgttagcctatttaaacatagatca-attacttgtttaaatatgttcaaatgaaata 105  Q
    |||||||||||| ||| |||||||||| | ||||| ||| ||| |||||||||||||| ||||||||    
T  5034150 tctattagttcgctagtctatttaaactttgatcacattgcttatttaaatatgttcatatgaaata 5034084  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 53059 - 53152
Alignment:
Q  13 tatcaaaagaaactttaatttcatcagtctattagttcgttagcctatttaaacatagatc-aattacttgtttaaatatgttcaaatgaaata 105  Q
    |||||||||| | |||||||| |||  | |||||||||||||  |||||||||| |||||| ||||  || |||||| ||||||| ||||||||    
T  53059 tatcaaaagagagtttaatttaatcgatatattagttcgttaatctatttaaacttagatctaattgtttatttaaagatgttcatatgaaata 53152  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 29697568 - 29697475
Alignment:
Q  13 tatcaaaagaaactttaatttcatcagtctattagttcgttagcctatttaaacatagatc-aattacttgtttaaatatgttcaaatgaaata 105  Q
    |||||||||| | |||||| | || | | |||||||||||||| |||||||||| ||||||  ||| ||| |||||| ||||||| ||||||||    
T  29697568 tatcaaaagagagtttaatctaattaatatattagttcgttagtctatttaaacttagatcgcattgcttatttaaagatgttcatatgaaata 29697475  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 39963991 - 39963931
Alignment:
Q  42 tattagttcgttagcctatttaaacatagatca-attacttgtttaaatatgttcaaatga 101  Q
    |||||||||||||| |||||||||| ||||| | ||||||| |||||| ||||||| ||||    
T  39963991 tattagttcgttagtctatttaaacttagattatattacttatttaaagatgttcatatga 39963931  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 51370267 - 51370203
Alignment:
Q  42 tattagttcgttagcctatttaaacatagatca-attacttgtttaaatatgttcaaatgaaata 105  Q
    |||| ||||||||| ||| |||||| ||||||| ||| ||| |||||||||||||| ||||||||    
T  51370267 tatttgttcgttagtctagttaaacttagatcacattgcttatttaaatatgttcatatgaaata 51370203  T

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