View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3579_high_8 (Length: 324)
Name: NF3579_high_8
Description: NF3579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3579_high_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 52472588 - 52472291
Alignment:
| Q |
18 |
caatgcagtcattagaatgttagaaatggagggtcagaataggggccaggtggagaagtggagaacacaaaggaaaaagtgttggatttgggccctagga |
117 |
Q |
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| T |
52472588 |
caatgtagtcattagaatgttagaaatggagggtcagaataggggccaggtggagaa--------cacaaaggaaaaagtgttggatttgggccctagga |
52472497 |
T |
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| Q |
118 |
agcccaatataaggaaagtatatgtgggaaagttggaaagatgaagaagatatatctactactactagacattgatctattagaagaaagaaggagatga |
217 |
Q |
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| T |
52472496 |
agcccaatataaggaaagtatatgtgggaaagttggaaagatgaagaagatatatctacta------gacattgatctattagaagaaagaaggagatga |
52472403 |
T |
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| Q |
218 |
tcatagagtcacaaccaatggaaaacgctaa--aaaacggtgattctgtttggtgaggtagaggtaaacattgaagcctttgt---ataatacttaagtg |
312 |
Q |
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| T |
52472402 |
tcatagagtcacaaccaatggaaaacgctaaaaaaaacggtgattctgtttggtgaggtagaggtaaacattgaagcctttgtgtaataatacttaagtg |
52472303 |
T |
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