View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3579_low_10 (Length: 408)
Name: NF3579_low_10
Description: NF3579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3579_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 22 - 391
Target Start/End: Original strand, 8297456 - 8297825
Alignment:
| Q |
22 |
gcagcagcaccattaaaaccaagatcaagatcttcctcgtcgccgtcatcttctttttcttgctcttctttaatacgcgatttgagagcattgaattgtt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8297456 |
gcagcagcaccattaaaaccaagatcaagatcttcctcgttgccgtcatcttctttttcttgctcttctttaatacgagatttgagagcattgaattgtt |
8297555 |
T |
|
| Q |
122 |
cattggtcttacgacatgtaaaagtgaggtcgttgtgcgaagtacgaaagtgattcgtcatgaaaagaggatcaagaactaacgatttccaaagcttgca |
221 |
Q |
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||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8297556 |
catcggtcttacgacatataaaagtgaggtcgttgtccgaagtacgaaagtgattcgtcatgaaaagaggatcaagaactaacgatttccaaagcttgca |
8297655 |
T |
|
| Q |
222 |
aacgcacctcaactcaagatgattacttaaatcaactcttgagagaatttcgatcatcacttcattcgggagtgacattgccgttggtttcgccatagga |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8297656 |
aacgcacctcaactcaagatgattacttaaatcaactcttgagagaatttcgatcatcacttcattcgggagtgacattgccgttgctttcgccatagga |
8297755 |
T |
|
| Q |
322 |
aaatatgatgaggtggctggaaaatgacaattacggtggcggaaagggttgcgagtaagagaggtgtggc |
391 |
Q |
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| T |
8297756 |
aaatatgatgaggtggctggaaaatgacaattacggtggcggaaagggttgcgagtaagagaggtgtggc |
8297825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 22 - 361
Target Start/End: Original strand, 8300971 - 8301310
Alignment:
| Q |
22 |
gcagcagcaccattaaaaccaagatcaagatcttcctcgtcgccgtcatcttctttttcttgctcttctttaatacgcgatttgagagcattgaattgtt |
121 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||| |
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| T |
8300971 |
gcagcagcaccattaaaatcaagatcaagatcttcctcgttgccgtcatcttctttttcttgttcttccttaatacgtgatttgagagcattgaattgtt |
8301070 |
T |
|
| Q |
122 |
cattggtcttacgacatgtaaaagtgaggtcgttgtgcgaagtacgaaagtgattcgtcatgaaaagaggatcaagaactaacgatttccaaagcttgca |
221 |
Q |
| |
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|||||| |||||||||| | ||||||||||| || |||||| |||||| |||| ||||||||| |||||||||| |||||||||||| |||||||| |
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| T |
8301071 |
cattggccttacgacatagagaagtgaggtcggtgatcgaagtgagaaagtaattcttcatgaaaattggatcaagaaataacgatttccacagcttgca |
8301170 |
T |
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| Q |
222 |
aacgcacctcaactcaagatgattacttaaatcaactcttgagagaatttcgatcatcacttcattcgggagtgacattgccgttggtttcgccatagga |
321 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| || | ||||||| |
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| T |
8301171 |
aacgcacctcaactcaagatgattacttgaatcgactcttgaaagaatttcgatcatcacttcatccgggagtgacattgccgttgcttctgtcatagga |
8301270 |
T |
|
| Q |
322 |
aaatatgatgaggtggctggaaaatgacaattacggtggc |
361 |
Q |
| |
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|||| |||||||||||| |||||||| || |||||||||| |
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| T |
8301271 |
aaatgtgatgaggtggccggaaaatggcagttacggtggc |
8301310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 85 - 391
Target Start/End: Complemental strand, 18279188 - 18278882
Alignment:
| Q |
85 |
tcttctttaatacgcgatttgagagcattgaattgttcattggtcttacgacatgtaaaagtgaggtcgttgtgcgaagtacgaaagtgattcgtcatga |
184 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||| || ||| ||||||| || |||||| ||| ||||||| |||||| |
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| T |
18279188 |
tcttccttaatacacgatttgagagcattgaattgttcattggccttacaacatatagaagcgaggtcggtgatcgaagtgagaaggtgattcttcatga |
18279089 |
T |
|
| Q |
185 |
aaagaggatcaagaactaacgatttccaaagcttgcaaacgcacctcaactcaagatgattacttaaatcaactcttgagagaatttcgatcatcacttc |
284 |
Q |
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|||||||||||||||||||| ||||||| | |||||||||||| |||||||| | ||||||| || ||||||||||||| |||||||||||||||||||| |
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| T |
18279088 |
aaagaggatcaagaactaacaatttccacaacttgcaaacgcatctcaactccaaatgattagttgaatcaactcttgaaagaatttcgatcatcacttc |
18278989 |
T |
|
| Q |
285 |
attcgggagtgacattgccgttggtttcgccataggaaaatatgatgaggtggctggaaaatgacaattacggtggcggaaagggttgcgagtaagagag |
384 |
Q |
| |
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|| ||||||||||||||||||| ||| ||||| | ||| ||| ||||| || |||||||| || |||||||||||||||||||||||||| |||||| |
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| T |
18278988 |
atctgggagtgacattgccgttgcttttgccatcgataaacgtgaagaggttgccggaaaatggcagttacggtggcggaaagggttgcgagtgagagag |
18278889 |
T |
|
| Q |
385 |
gtgtggc |
391 |
Q |
| |
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|| |||| |
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| T |
18278888 |
gtttggc |
18278882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 171 - 286
Target Start/End: Complemental strand, 21120096 - 21119981
Alignment:
| Q |
171 |
gtgattcgtcatgaaaagaggatcaagaactaacgatttccaaagcttgcaaacgcacctcaactcaagatgattacttaaatcaactcttgagagaatt |
270 |
Q |
| |
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||||||| ||||||| |||||||| ||| |||||||||||| | ||||||||||||||||| || |||||||||||| ||||||||||||| || ||| |
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| T |
21120096 |
gtgattcttcatgaactgaggatcacgaattaacgatttccacaagttgcaaacgcacctcaaatccagatgattacttgaatcaactcttgaaaggatt |
21119997 |
T |
|
| Q |
271 |
tcgatcatcacttcat |
286 |
Q |
| |
|
|| |||| || ||||| |
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| T |
21119996 |
tccatcagcagttcat |
21119981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 188 - 284
Target Start/End: Original strand, 7323259 - 7323355
Alignment:
| Q |
188 |
gaggatcaagaactaacgatttccaaagcttgcaaacgcacctcaactcaagatgattacttaaatcaactcttgagagaatttcgatcatcacttc |
284 |
Q |
| |
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||||||||||||||| ||| ||||| | ||||||||||||||||| | ||| ||| ||| |||||||||| || || ||||||||||||||||| |
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| T |
7323259 |
gaggatcaagaactagcgaattccacaagttgcaaacgcacctcaattgcagagtattgcttgaatcaactctagaaaggatttcgatcatcacttc |
7323355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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