View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3579_low_12 (Length: 312)
Name: NF3579_low_12
Description: NF3579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3579_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 42039062 - 42039223
Alignment:
| Q |
16 |
ataacaacacctcaaaaagaaactagtgtgtggcggcatgaaaaaaccttctaaagaagggtacaagactnnnnnnntaaggaatatgcatcatagacca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
42039062 |
ataacaacacctcaaaaagaaactagtgtgtggcggcatgaaaaaaccttctaaagaagggtacaagact-aaaaaataaggaatatgcatcatagacaa |
42039160 |
T |
|
| Q |
116 |
atatcagcacaaaaagcaacatctcgaaaagnnnnnnnggcttgagaaaatagcacataccga |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42039161 |
atatcagcacaaaaagcaacatctcgaaaagaaaaaaaggcttgagaaaatagcacataccga |
42039223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 219 - 304
Target Start/End: Original strand, 42039844 - 42039929
Alignment:
| Q |
219 |
taaaggtaatacatgannnnnnnatgaagttttcattattttggttataccatagacaaatttgtcacatataatgttatattctt |
304 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42039844 |
taaaggtaatacatgatttttttatggagttttcattattttagttataccatagacaaatttgtcacatataatgttatattctt |
42039929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University