View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3579_low_17 (Length: 250)

Name: NF3579_low_17
Description: NF3579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3579_low_17
NF3579_low_17
[»] chr3 (8 HSPs)
chr3 (9-230)||(30889415-30889636)
chr3 (86-172)||(44512883-44512969)
chr3 (176-230)||(36618937-36618991)
chr3 (81-137)||(48050530-48050586)
chr3 (172-230)||(23564121-23564179)
chr3 (99-148)||(50370620-50370669)
chr3 (181-229)||(48907301-48907349)
chr3 (173-221)||(52417867-52417915)
[»] chr8 (4 HSPs)
chr8 (74-148)||(30446160-30446234)
chr8 (171-230)||(30491836-30491895)
chr8 (176-230)||(18896782-18896836)
chr8 (176-229)||(30491645-30491698)
[»] scaffold0007 (2 HSPs)
scaffold0007 (176-225)||(201310-201359)
scaffold0007 (169-230)||(201672-201733)
[»] chr1 (3 HSPs)
chr1 (170-230)||(35820109-35820169)
chr1 (97-148)||(13092149-13092200)
chr1 (95-139)||(46264094-46264138)
[»] chr4 (6 HSPs)
chr4 (172-230)||(4460166-4460224)
chr4 (81-136)||(11563575-11563631)
chr4 (171-230)||(29248011-29248070)
chr4 (176-222)||(39238793-39238839)
chr4 (81-138)||(35850483-35850540)
chr4 (76-173)||(56462581-56462677)
[»] chr6 (1 HSPs)
chr6 (74-139)||(28950426-28950492)
[»] chr7 (1 HSPs)
chr7 (176-221)||(40352642-40352687)
[»] chr5 (2 HSPs)
chr5 (175-224)||(17483526-17483575)
chr5 (169-229)||(11167869-11167929)
[»] chr2 (1 HSPs)
chr2 (166-226)||(4423780-4423840)


Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 30889636 - 30889415
Alignment:
Q  9 gagatgaacaactatcttagacttcaaaaaataagtacgaaattttgctctcatnnnnnnnnnttattaggcgttcattaggccttaaaaaattacttca 108  Q
    |||| |||||||||||||||||||||||| |||||||| ||||||||| |||||         |||||||||  ||||||||||||||||||||||||||    
T  30889636 gagaagaacaactatcttagacttcaaaatataagtacaaaattttgcactcataaaaaaaaattattaggcactcattaggccttaaaaaattacttca 30889537  T
Q  109 attctaatggaagatgtggttgttagtaatatgcttagttttctgttgactaatctataatttaggtttaattgcagttttgacaccctatgtatcacaa 208  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30889536 attctaatggaagatgtggttgttagtaatatgcttagttctctgttgactaatttataatttaggtttaattgcagttttgacaccctatgtatcacaa 30889437  T
Q  209 tcttgtgattttgaccccctat 230  Q
    |||||||||| || ||||||||    
T  30889436 tcttgtgattctggccccctat 30889415  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 44512969 - 44512883
Alignment:
Q  86 ttaggccttaaaaaattacttcaattctaatggaagatgtggttgttagtaatatgcttagttttctgttgactaatctataattta 172  Q
    ||||||| ||||||||||||| ||||||||||| || ||||||||||||||||  |||||||| | ||||||| ||| ||| |||||    
T  44512969 ttaggccataaaaaattacttaaattctaatgggaggtgtggttgttagtaattggcttagttctttgttgaccaatttattattta 44512883  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 36618991 - 36618937
Alignment:
Q  176 ttaattgcagttttgacaccctatgtatcacaatcttgtgattttgaccccctat 230  Q
    |||||| |||||||||  ||||| |||||| ||||||||||||||||||||||||    
T  36618991 ttaattacagttttgatcccctaagtatcataatcttgtgattttgaccccctat 36618937  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 48050530 - 48050586
Alignment:
Q  81 gttcattaggccttaaaaaattacttcaattctaatggaagatgtggttgttagtaa 137  Q
    ||||||||||||  |||||||||||| |||||||||||||  |||||||| ||||||    
T  48050530 gttcattaggcccaaaaaaattacttaaattctaatggaatgtgtggttgatagtaa 48050586  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 23564121 - 23564179
Alignment:
Q  172 aggtttaattgcagttttgacaccctatgtatcacaatcttgtgattttgaccccctat 230  Q
    ||||||||||| ||||||||| | ||| |||||||||||||| ||||||| || |||||    
T  23564121 aggtttaattgtagttttgaccctctaagtatcacaatcttgcgattttggcctcctat 23564179  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 50370620 - 50370669
Alignment:
Q  99 aattacttcaattctaatggaagatgtggttgttagtaatatgcttagtt 148  Q
    |||||||| ||||||||| |||  ||||||||||||||||| ||||||||    
T  50370620 aattacttaaattctaatagaatgtgtggttgttagtaataggcttagtt 50370669  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 48907301 - 48907349
Alignment:
Q  181 tgcagttttgacaccctatgtatcacaatcttgtgattttgacccccta 229  Q
    |||| ||||||| |||||||| ||| ||| |||||||||||||||||||    
T  48907301 tgcacttttgaccccctatgtttcaaaatgttgtgattttgacccccta 48907349  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 52417867 - 52417915
Alignment:
Q  173 ggtttaattgcagttttgacaccctatgtatcacaatcttgtgattttg 221  Q
    |||||||||||||||||| |  |||| ||||||||| ||||||||||||    
T  52417867 ggtttaattgcagttttgccctcctaagtatcacaaccttgtgattttg 52417915  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 30446234 - 30446160
Alignment:
Q  74 attaggcgttcattaggccttaaaaaattacttcaattctaatggaagatgtggttgttagtaatatgcttagtt 148  Q
    |||||| ||||||||||||| |||||||||||| |||||||| || |  ||||||||||||||||||||||||||    
T  30446234 attaggggttcattaggcctaaaaaaattacttaaattctaaagggatgtgtggttgttagtaatatgcttagtt 30446160  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 30491895 - 30491836
Alignment:
Q  171 taggtttaattgcagttttgacaccctatgtatcacaatcttgtgattttgaccccctat 230  Q
    |||| ||||||||||||||||| || || |||||| ||||||| ||||||||||| ||||    
T  30491895 taggcttaattgcagttttgaccccataagtatcataatcttgcgattttgaccctctat 30491836  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 18896836 - 18896782
Alignment:
Q  176 ttaattgcagttttgacaccctatgtatcacaatcttgtgattttgaccccctat 230  Q
    ||||||||||||||| |  |||| |||||||||||||||||||||| || |||||    
T  18896836 ttaattgcagttttggcctcctaagtatcacaatcttgtgattttggcctcctat 18896782  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 30491645 - 30491698
Alignment:
Q  176 ttaattgcagttttgacaccctatgtatcacaatcttgtgattttgacccccta 229  Q
    |||||| || ||||||| ||||| |||||||||||||| ||||||| |||||||    
T  30491645 ttaattacatttttgaccccctaagtatcacaatcttgcgattttggcccccta 30491698  T

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Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 201310 - 201359
Alignment:
Q  176 ttaattgcagttttgacaccctatgtatcacaatcttgtgattttgaccc 225  Q
    ||||||||||||||||| ||||| |||||||||||||| |||||||||||    
T  201310 ttaattgcagttttgaccccctaagtatcacaatcttgcgattttgaccc 201359  T

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Target: scaffold0007; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 201733 - 201672
Alignment:
Q  169 tttaggtttaattgcagttttgacaccctatgtatcacaatcttgtgattttgaccccctat 230  Q
    |||||||||||||||||||||| | ||||| ||||||||||||| |||||||  ||||||||    
T  201733 tttaggtttaattgcagttttggccccctaagtatcacaatcttatgattttagccccctat 201672  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 35820169 - 35820109
Alignment:
Q  170 ttaggtttaattgcagttttgacaccctatgtatcacaatcttgtgattttgaccccctat 230  Q
    ||||| ||||||||||||||| | ||||| |||||||||||||| ||||||| ||||||||    
T  35820169 ttaggcttaattgcagttttggccccctaagtatcacaatcttgcgattttggccccctat 35820109  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 13092200 - 13092149
Alignment:
Q  97 aaaattacttcaattctaatggaagatgtggttgttagtaatatgcttagtt 148  Q
    |||||||||  |||| ||||||||||||||||||||||||||  ||||||||    
T  13092200 aaaattactcaaattttaatggaagatgtggttgttagtaatgagcttagtt 13092149  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 46264138 - 46264094
Alignment:
Q  95 aaaaaattacttcaattctaatggaagatgtggttgttagtaata 139  Q
    |||||||||||| ||||||||||| || | |||||||||||||||    
T  46264138 aaaaaattacttaaattctaatgggaggtatggttgttagtaata 46264094  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 4460166 - 4460224
Alignment:
Q  172 aggtttaattgcagttttgacaccctatgtatcacaatcttgtgattttgaccccctat 230  Q
    ||||||||| | ||||||| |  |||| |||||||||||||||||||||||||||||||    
T  4460166 aggtttaatcgtagttttggcctcctaagtatcacaatcttgtgattttgaccccctat 4460224  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 11563631 - 11563575
Alignment:
Q  81 gttcattaggccttaaaaaa-ttacttcaattctaatggaagatgtggttgttagta 136  Q
    |||||||||||||||||||| |||||| ||||||||||| || |||| |||||||||    
T  11563631 gttcattaggccttaaaaaagttacttaaattctaatgggaggtgtgattgttagta 11563575  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 29248011 - 29248070
Alignment:
Q  171 taggtttaattgcagttttgacaccctatgtatcacaatcttgtgattttgaccccctat 230  Q
    |||||||||||||||||||| | | ||| ||||||||||||| | ||||||| |||||||    
T  29248011 taggtttaattgcagttttggccctctaagtatcacaatcttctaattttgatcccctat 29248070  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 39238793 - 39238839
Alignment:
Q  176 ttaattgcagttttgacaccctatgtatcacaatcttgtgattttga 222  Q
    ||||||||||||||||| | ||| |||||||||||||| ||||||||    
T  39238793 ttaattgcagttttgactctctaagtatcacaatcttgcgattttga 39238839  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 35850540 - 35850483
Alignment:
Q  81 gttcattaggccttaaaaaattacttcaattctaatggaagatgtggttgttagtaat 138  Q
    ||||||||  ||||||||||||||||||||| ||| || ||| || ||||||||||||    
T  35850540 gttcattataccttaaaaaattacttcaattttaaagggagacgttgttgttagtaat 35850483  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 173
Target Start/End: Original strand, 56462581 - 56462677
Alignment:
Q  76 taggcgttcattaggccttaaaaaattacttcaattctaatggaagatgtggttgttagtaatatgcttagttttctgttgactaatctataatttag 173  Q
    |||| ||||||||||||  |||||||||||| |||| ||| || |  ||||||||||||||||| |||| ||| | |||||||  || ||||||||||    
T  56462581 taggagttcattaggccc-aaaaaattacttaaattttaaagggatgtgtggttgttagtaataggctttgttctttgttgacccatttataatttag 56462677  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 28950426 - 28950492
Alignment:
Q  74 attaggcgttcattagg-ccttaaaaaattacttcaattctaatggaagatgtggttgttagtaata 139  Q
    |||||| |||||||||| ||| |||||| ||||| ||||||||||| |  |||||||||||||||||    
T  28950426 attaggggttcattaggtcctaaaaaaaatacttaaattctaatgggaagtgtggttgttagtaata 28950492  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 40352642 - 40352687
Alignment:
Q  176 ttaattgcagttttgacaccctatgtatcacaatcttgtgattttg 221  Q
    ||||||| ||||||||| ||||| |||||||||||||| |||||||    
T  40352642 ttaattgtagttttgaccccctaagtatcacaatcttgcgattttg 40352687  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 17483575 - 17483526
Alignment:
Q  175 tttaattgcagttttgacaccctatgtatcacaatcttgtgattttgacc 224  Q
    |||||||||| ||||||| | |||||||||||||||||| ||||| ||||    
T  17483575 tttaattgcaattttgaccctctatgtatcacaatcttgcgatttcgacc 17483526  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 11167869 - 11167929
Alignment:
Q  169 tttaggtttaattgcagttttgacaccctatgtatcacaatcttgtgattttgacccccta 229  Q
    |||||| ||||| | ||||||||| || || ||||||||| |||||||||||| |||||||    
T  11167869 tttaggcttaatagtagttttgaccccttaagtatcacaaacttgtgattttggcccccta 11167929  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 4423840 - 4423780
Alignment:
Q  166 taatttaggtttaattgcagttttgacaccctatgtatcacaatcttgtgattttgacccc 226  Q
    |||||||||||||||||||||||| || |||||||| | | ||  ||| ||||||||||||    
T  4423840 taatttaggtttaattgcagttttaactccctatgttttaaaaagttgcgattttgacccc 4423780  T

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