View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3579_low_21 (Length: 238)

Name: NF3579_low_21
Description: NF3579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3579_low_21
NF3579_low_21
[»] chr5 (3 HSPs)
chr5 (8-223)||(18311825-18312040)
chr5 (15-155)||(16842403-16842545)
chr5 (15-128)||(41136016-41136131)
[»] chr6 (3 HSPs)
chr6 (18-120)||(13281195-13281298)
chr6 (18-150)||(30630820-30630956)
chr6 (21-86)||(6441709-6441774)
[»] scaffold0005 (1 HSPs)
scaffold0005 (16-195)||(173839-174018)
[»] chr4 (2 HSPs)
chr4 (15-116)||(12607206-12607309)
chr4 (16-195)||(14643274-14643453)
[»] chr7 (1 HSPs)
chr7 (16-55)||(9419216-9419255)
[»] chr2 (1 HSPs)
chr2 (14-82)||(35655855-35655922)


Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 18312040 - 18311825
Alignment:
Q  8 atgtcttcagatgtaggtgacgttgcaccgaactacattaccaaatctcgtgttcttctttagcacactttattttatttttgtctattatttattgtgt 107  Q
    |||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18312040 atgtctccagatgtaggtaacgttgcaccgaactgcattaccaaatctcgtgttcttctttatcacactttattttatttttgtctattatttattgtgt 18311941  T
Q  108 tgcattgtcgtacctgttgtccatgacatcacacttgttgaacttgttatcctcgacataaggtagaacatctgtccaacgagtactagaattacaattt 207  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||||||||||||||||    
T  18311940 tgcattatcgtacctgttgtccatgacatcacacttgttgaacttgttatcctggacatcaggtagaacatctatccaacgattactagaattacaattt 18311841  T
Q  208 tgattgcgtgaaaggt 223  Q
    ||||||||| ||||||    
T  18311840 tgattgcgtcaaaggt 18311825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 16842545 - 16842403
Alignment:
Q  15 cagatgtaggtgacgttgcaccgaactacattaccaaatctcgtg--ttcttctttagcacactttattttatttttgtctattatttattgtgttgcat 112  Q
    |||||||||||||||||||||||||||  ||||||||||||| ||  ||||| |||| |  ||||||||||||||||| ||||| |||||||||  ||||    
T  16842545 cagatgtaggtgacgttgcaccgaactggattaccaaatctcttgggttcttttttatcgtactttattttatttttgcctattgtttattgtgcggcat 16842446  T
Q  113 tgtcgtacctgttgtccatgacatcacacttgttgaacttgtt 155  Q
    ||||| |||||||||  | |||||||| ||||| |||||||||    
T  16842445 tgtcgcacctgttgtttaggacatcactcttgtggaacttgtt 16842403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 41136131 - 41136016
Alignment:
Q  15 cagatgtaggtgacgttgcaccgaactacattaccaaatctc----gtgttcttctttagcacactttattttatttttgtctattatttattgtgttgc 110  Q
    |||||||||||||| ||||||||||||  |||||||||||||    || || |||||||   ||||||| ||||   |||| |||| ||||||||| |||    
T  41136131 cagatgtaggtgacattgcaccgaactggattaccaaatctcatgtgtttttttctttattgcactttacttta--attgtttattgtttattgtgatgc 41136034  T
Q  111 attgtcgtacctgttgtc 128  Q
    |||||||||| |||||||    
T  41136033 attgtcgtacatgttgtc 41136016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 13281195 - 13281298
Alignment:
Q  18 atgtaggtgacgttgcaccgaactacattaccaaatct--cgtgttcttctttagcacactttattttatttttgtctattatttattgtgttgcattgt 115  Q
    |||||||||| |||||||||||||   |||||||||||  |||||||||||||| ||||||||| ||||||| ||||| || ||||||||| |  |||||    
T  13281195 atgtaggtgatgttgcaccgaactgggttaccaaatctatcgtgttcttctttatcacactttactttatttctgtctgtt-tttattgtgctatattgt 13281293  T
Q  116 cgtac 120  Q
    |||||    
T  13281294 cgtac 13281298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 30630956 - 30630820
Alignment:
Q  18 atgtaggtgacgttgcaccgaactacattaccaaatctc--gtgttctt-ctttagcacactttattttattt-ttgtctattatttattgtgttgcatt 113  Q
    ||||||||||||||||||| ||  | |||||||||||||  ||||| || ||||| | ||||||| |||| || |||| |||||||||||||| ||||||    
T  30630956 atgtaggtgacgttgcaccaaatgagattaccaaatctcatgtgttatttctttatcgcactttactttaattgttgtttattatttattgtgctgcatt 30630857  T
Q  114 gtcgtacctgttgtccatgacatcacacttgttgaac 150  Q
    ||||||| | ||||| | |||||||  ||||||||||    
T  30630856 gtcgtacatattgtcgaggacatcattcttgttgaac 30630820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 6441774 - 6441709
Alignment:
Q  21 taggtgacgttgcaccgaactacattaccaaatctcgtgttcttctttagcacactttattttatt 86  Q
    |||||||||||||| ||||||| |||| |||||||| |||||||| ||    ||||||||||||||    
T  6441774 taggtgacgttgcatcgaactagattatcaaatctcatgttcttccttcctgcactttattttatt 6441709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 173839 - 174018
Alignment:
Q  16 agatgtaggtgacgttgcaccgaactacattaccaaatctcgtgttcttctttagcacactttattttatttttgtctattatttattgtgttgcattgt 115  Q
    ||||||||||||||||||| | ||||   ||||||||||| ||||||||||||| | |||| |  ||||||| | |||| ||||| |||||||  |||||    
T  173839 agatgtaggtgacgttgcaacaaactgg-ttaccaaatctagtgttcttctttatcgcactctgctttatttatctctactatttgttgtgttatattgt 173937  T
Q  116 cgtacctgttgtccatgacatcaca-cttgttgaacttgttatcctcgacataaggtagaacatctgtccaacgagtacta 195  Q
    ||||| ||||||| | |||||| ||  |||||| || | || |||  ||||| | ||||||||||| ||| ||||||||||    
T  173938 cgtacatgttgtctaggacatctcattttgttgtacctattgtccgggacatcacgtagaacatctttcctacgagtacta 174018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 12607309 - 12607206
Alignment:
Q  15 cagatgtaggtgacgttgcaccgaactacattaccaa--atctcgtgttcttctttagcacactttattttatttttgtctattatttattgtgttgcat 112  Q
    |||||||||||||||||||||||||||  |||| |||  |||| |||||||||||||    ||| ||||||||| ||||| ||| |||||||||||| ||    
T  12607309 cagatgtaggtgacgttgcaccgaactggattatcaaatatcttgtgttcttctttattgtactctattttattcttgtccattgtttattgtgttgtat 12607210  T
Q  113 tgtc 116  Q
    ||||    
T  12607209 tgtc 12607206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 14643453 - 14643274
Alignment:
Q  16 agatgtaggtgacgttgcaccgaactacattaccaaatctcgtgttcttctttagcacactttattttatttttgtctattatttattgtgttgcattgt 115  Q
    ||||||||||||||||||| | ||||   ||||||||||| ||||||||||||| | |||| |  ||||||| | |||| ||||| |||||||  |||||    
T  14643453 agatgtaggtgacgttgcaacaaactgg-ttaccaaatctagtgttcttctttatcgcactctgctttatttatctctactatttgttgtgttatattgt 14643355  T
Q  116 cgtacctgttgtccatgacatcaca-cttgttgaacttgttatcctcgacataaggtagaacatctgtccaacgagtacta 195  Q
    ||||| ||||||| | |||||| ||  |||||| || | || |||  ||||| | ||||||||||| ||| ||||||||||    
T  14643354 cgtacatgttgtctaggacatctcattttgttgtacctattgtccgggacatcacgtagaacatctttcctacgagtacta 14643274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 9419216 - 9419255
Alignment:
Q  16 agatgtaggtgacgttgcaccgaactacattaccaaatct 55  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  9419216 agatgtaggtgacgttgcaccgaactaggttaccaaatct 9419255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 35655922 - 35655855
Alignment:
Q  14 tcagatgtaggtgacgttgcaccgaactacattaccaaatctcgtgttcttctttagcacactttattt 82  Q
    ||||||||||||||||||| ||||||| |  |||||||||||| || | ||||||| | ||||||||||    
T  35655922 tcagatgtaggtgacgttgtaccgaacaaggttaccaaatctcttg-tgttctttatcgcactttattt 35655855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University