View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3579_low_25 (Length: 203)
Name: NF3579_low_25
Description: NF3579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3579_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 17794556 - 17794382
Alignment:
| Q |
14 |
cagagataagttttgtacccgaacaacttacaattgcaatggtgccttttccctttacagaaatattttgtccattgccaattctgacttttgaggtctt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
17794556 |
cagagataagttttgtacccgaacaacttacaattgcaatggtgccttttccctttacagaaatattctgtccattgccaattctgacttttgaggtctt |
17794457 |
T |
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| Q |
114 |
tgaactccttaattccttgaaaatttctttgtcatatgtcatatgattagtgcagccactatcaattaaccaact |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17794456 |
tgaactccttaattccttgaaaatttctttgtcatatgtcatatgattagtgcagccactatcaattaaccaact |
17794382 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 1542434 - 1542260
Alignment:
| Q |
14 |
cagagataagttttgtacccgaacaacttacaattgcaatggtgccttttccctttacagaaatattttgtccattgccaattctgacttttgaggtctt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1542434 |
cagagataagttttgtacccgaacaacttacaattgcaatggtgccttttccctttacagcaatattttgtccattgccaattctgacttttgaggtctt |
1542335 |
T |
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| Q |
114 |
tgaactccttaattccttgaaaatttctttgtcatatgtcatatgattagtgcagccactatcaattaaccaact |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1542334 |
tgaactccttaattccttgaaaatttctttgtcatatgtcatatgattagtgcagccactatcaattaaccaact |
1542260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 26402067 - 26401893
Alignment:
| Q |
14 |
cagagataagttttgtacccgaacaacttacaattgcaatggtgccttttccctttacagaaatattttgtccattgccaattctgacttttgaggtctt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26402067 |
cagagataagttttgtacccgaacaacttacaattgcaatggtgccttttccctttacagcaatattttgtccattgccaattctgacttttgaggtctt |
26401968 |
T |
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| Q |
114 |
tgaactccttaattccttgaaaatttctttgtcatatgtcatatgattagtgcagccactatcaattaaccaact |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26401967 |
tgaactccttaattccttgaaaatttctttgtcatatgtcatatgattagtgcagccactatcaattaaccaact |
26401893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 7035136 - 7034962
Alignment:
| Q |
14 |
cagagataagttttgtacccgaacaacttacaattgcaatggtgccttttccctttacagaaatattttgtccattgccaattctgacttttgaggtctt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7035136 |
cagagataagttttgtacccgaacaacttacaattgcaatggtgccttttctctttacagcaatattttgtccattgccaattctgacttttgaggtctt |
7035037 |
T |
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| Q |
114 |
tgaactccttaattccttgaaaatttctttgtcatatgtcatatgattagtgcagccactatcaattaaccaact |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7035036 |
tgaactccttaattccttgaaaatttctttgtcatatgtcatatgattagtgcagccactatcaattaaccaact |
7034962 |
T |
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