View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3579_low_4 (Length: 490)
Name: NF3579_low_4
Description: NF3579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3579_low_4 |
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| [»] scaffold1383 (1 HSPs) |
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Alignment Details
Target: scaffold1383 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: scaffold1383
Description:
Target: scaffold1383; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 479
Target Start/End: Original strand, 211 - 655
Alignment:
| Q |
19 |
gtctatatgttgctgcttttgatcatctatatgcgatatagatatcagagacatgtgttcgcggttcctattcgatgttttcaaagtgtttgaaatttgg |
118 |
Q |
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| T |
211 |
gtctatatgttgctgcttttgatcatctatatgcgatatagatatcagagacatgtgttcgccgttcctattcaatgttttcaaagtgtttgaaatttgg |
310 |
T |
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| Q |
119 |
ggaatttaatagtgatttgcggttatactatggcattcattcgatgggaaaactatgtcgatgacttgaatatgattcaatcattatttataggattttc |
218 |
Q |
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| T |
311 |
g-aatttaataatgatttgcggttatactatggcattcattcgatgggaaaactatgtcgatgacttgaatatgattcaatcattatttataggattttc |
409 |
T |
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| Q |
219 |
cttatgttcattgcgttgccgatccttttacatgagatgtgaannnnnnnnaatataattgattgatatgttaattttcaagagagaagagttccaattt |
318 |
Q |
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| T |
410 |
cttatgttcattgcgttgccgatccttttacatgagatgtgaatttgttttaatattattgattcatatgttaattttcaagagagatgagttccaattt |
509 |
T |
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| Q |
319 |
ggagattgccgttttattcttttggataattaatggcctgttaatattaatcaatttatattaaatcaataatatttggcatatgattgaatgaatgaca |
418 |
Q |
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| T |
510 |
ggagattgccgtttcattcttttagataattaatggcctgttaatatt---------------aatcaataatatttggcatatgattgaatgaatgaca |
594 |
T |
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| Q |
419 |
gttataattgtacatctgacactgattaggtgcgcaaagcattcaccttttgtgagtctgt |
479 |
Q |
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| T |
595 |
gttataattgtacgtctgacactgattaggtgcgcaaagcattcaccttttgtgagtctgt |
655 |
T |
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