View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3579_low_6 (Length: 454)

Name: NF3579_low_6
Description: NF3579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3579_low_6
NF3579_low_6
[»] chr4 (6 HSPs)
chr4 (19-173)||(45499720-45499872)
chr4 (271-345)||(12129711-12129785)
chr4 (265-345)||(8155819-8155899)
chr4 (265-339)||(1290143-1290217)
chr4 (265-313)||(1834202-1834250)
chr4 (265-345)||(1835041-1835121)
[»] chr8 (12 HSPs)
chr8 (265-345)||(10006426-10006506)
chr8 (265-345)||(10007702-10007782)
chr8 (285-339)||(1824023-1824077)
chr8 (285-339)||(1858468-1858522)
chr8 (271-333)||(11456697-11456759)
chr8 (289-345)||(1823659-1823715)
chr8 (289-345)||(1858104-1858160)
chr8 (265-328)||(5514063-5514126)
chr8 (285-344)||(23169931-23169990)
chr8 (263-313)||(24123869-24123919)
chr8 (299-344)||(5514219-5514265)
chr8 (265-313)||(30335721-30335769)
[»] chr7 (12 HSPs)
chr7 (265-345)||(7500536-7500616)
chr7 (265-333)||(22629568-22629636)
chr7 (278-345)||(7501791-7501858)
chr7 (285-344)||(18371526-18371585)
chr7 (271-345)||(47369869-47369943)
chr7 (265-333)||(18372408-18372476)
chr7 (286-345)||(22630391-22630450)
chr7 (294-345)||(46482708-46482759)
chr7 (285-345)||(43900428-43900488)
chr7 (265-310)||(14998062-14998107)
chr7 (265-313)||(770732-770780)
chr7 (265-313)||(32253398-32253446)
[»] chr5 (12 HSPs)
chr5 (265-345)||(18486841-18486921)
chr5 (271-345)||(19752999-19753073)
chr5 (265-345)||(18485227-18485307)
chr5 (265-345)||(25524037-25524117)
chr5 (285-345)||(2686340-2686400)
chr5 (271-345)||(19754069-19754143)
chr5 (265-333)||(25523151-25523219)
chr5 (265-344)||(22940563-22940642)
chr5 (265-313)||(42195214-42195262)
chr5 (278-345)||(24333008-24333074)
chr5 (281-313)||(2186868-2186900)
chr5 (265-313)||(42196171-42196219)
[»] chr6 (4 HSPs)
chr6 (265-345)||(7314961-7315041)
chr6 (271-345)||(7316233-7316307)
chr6 (280-328)||(17496895-17496943)
chr6 (265-313)||(1829574-1829622)
[»] chr3 (14 HSPs)
chr3 (265-345)||(47615516-47615596)
chr3 (285-345)||(12700275-12700335)
chr3 (265-345)||(34019084-34019164)
chr3 (265-345)||(47614267-47614347)
chr3 (289-339)||(8876012-8876062)
chr3 (271-345)||(11670472-11670546)
chr3 (278-326)||(11671299-11671347)
chr3 (265-324)||(52105627-52105686)
chr3 (271-345)||(12703439-12703513)
chr3 (299-335)||(17776800-17776836)
chr3 (299-335)||(19078101-19078137)
chr3 (265-344)||(7758484-7758563)
chr3 (278-339)||(19984944-19985004)
chr3 (305-345)||(8593085-8593125)
[»] chr1 (21 HSPs)
chr1 (270-345)||(39221401-39221476)
chr1 (265-345)||(36612934-36613014)
chr1 (285-339)||(43059951-43060005)
chr1 (271-345)||(50681547-50681621)
chr1 (265-345)||(37526817-37526897)
chr1 (265-345)||(50680413-50680493)
chr1 (266-345)||(25652797-25652876)
chr1 (265-345)||(36613843-36613923)
chr1 (265-335)||(51685714-51685784)
chr1 (285-334)||(39222423-39222472)
chr1 (266-323)||(43058868-43058925)
chr1 (263-313)||(43377800-43377850)
chr1 (265-345)||(35594297-35594377)
chr1 (265-313)||(35595163-35595211)
chr1 (278-345)||(39153056-39153122)
chr1 (299-345)||(23980414-23980460)
chr1 (304-333)||(7674596-7674625)
chr1 (278-339)||(39152026-39152086)
chr1 (260-313)||(40384802-40384855)
chr1 (265-313)||(51684448-51684496)
chr1 (289-345)||(52275074-52275130)
[»] chr2 (9 HSPs)
chr2 (265-345)||(22848273-22848353)
chr2 (285-339)||(13030391-13030445)
chr2 (268-335)||(21837124-21837191)
chr2 (285-345)||(18869101-18869161)
chr2 (285-345)||(18905927-18905987)
chr2 (265-345)||(28618003-28618083)
chr2 (265-345)||(18797329-18797409)
chr2 (278-313)||(11996802-11996837)
chr2 (273-321)||(18904457-18904505)
[»] scaffold0320 (1 HSPs)
scaffold0320 (260-339)||(19565-19644)
[»] scaffold1303 (1 HSPs)
scaffold1303 (265-313)||(1521-1569)
[»] scaffold0045 (1 HSPs)
scaffold0045 (265-313)||(48389-48436)


Alignment Details
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 45499872 - 45499720
Alignment:
Q  19 ctgttgataacgaaataacaaatcgaaaagtgattttgattacctattcgtttccctcccttacgctctgaatttaggggagtgagttagttcagtacac 118  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45499872 ctgttgataacgaaa---caaatcgaaaagtgattttgattacctattcgtttccctcccttacgctctgaatttaggggagtgagttagttcagtacac 45499776  T
Q  119 ttttaacttaagtctccgtcacgtttgaac-tttgtttctaacttcaaaatttgct 173  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  45499775 ttttaacttaagtctccgtctcgtttgaacttttgtttctaacttcaaaatttgct 45499720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 271 - 345
Target Start/End: Original strand, 12129711 - 12129785
Alignment:
Q  271 atttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    |||||| || ||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||| |||||    
T  12129711 atttagcccatttgcatctttggtcattttgatcaattttgacttattcaacgcctacgtggcaggccacgtgtg 12129785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 345
Target Start/End: Original strand, 8155819 - 8155899
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||| |||||| | |||| ||||||| ||| | |||||||| ||||||||||||||||||||||| |||||||| |||||    
T  8155819 cctaagatttagccgctttgcatctttagtcattttggtcaactttgacttattcaacgcctacgtagcaggccacgtgtg 8155899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 339
Target Start/End: Complemental strand, 1290217 - 1290143
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggcca 339  Q
    ||||| |||||  |||||| ||||||||||||| |||||||||||||||  | |||||||||| |||||| ||||    
T  1290217 cctaagatttaacccctttgcatctttggtccttttggtcaattttgaccgagtcaacgcctaagtggcatgcca 1290143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 1834202 - 1834250
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgac 313  Q
    ||||| |||||| || ||| ||||||||||||| |||||||||||||||    
T  1834202 cctaagatttagcccatttgcatctttggtccttttggtcaattttgac 1834250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 345
Target Start/End: Complemental strand, 1835121 - 1835041
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||| |||||| |||||| ||||||||||||| || | ||||||||||||  ||||||| ||  ||||| |||| |||||    
T  1835121 cctaagatttagcccctttgcatctttggtccttttagccaattttgacttggtcaacgcttatttggcatgccacgtgtg 1835041  T

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Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 265 - 345
Target Start/End: Original strand, 10006426 - 10006506
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||| |||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  10006426 cctaagatttagcccctttgcatctttggtccttttggtcaattttgacttattcaacgcctacgtggcaggccacgtgtg 10006506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 265 - 345
Target Start/End: Complemental strand, 10007782 - 10007702
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||| |||||| |||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||    
T  10007782 cctaagatttagcccctttgcatctttggtccttttcgtcaattttgacttattcaacgcctacgtggcaggccacgtgtg 10007702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 1824077 - 1824023
Alignment:
Q  285 catctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggcca 339  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  1824077 catctttggtccttttggtcaattttgacttattcaacgcctacgtggtaggcca 1824023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 1858522 - 1858468
Alignment:
Q  285 catctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggcca 339  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  1858522 catctttggtccttttggtcaattttgacttattcaacgcctacgtggtaggcca 1858468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 271 - 333
Target Start/End: Original strand, 11456697 - 11456759
Alignment:
Q  271 atttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggc 333  Q
    |||||| ||| || ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11456697 atttagccccattgcatctttggtccttttggtcaattttgacttattcaacgcctacgtggc 11456759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 1823659 - 1823715
Alignment:
Q  289 tttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||    
T  1823659 tttggtccttttggccaattttgatttattcaacgcctacgtggcaggccatgtgtg 1823715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 1858104 - 1858160
Alignment:
Q  289 tttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||    
T  1858104 tttggtccttttggccaattttgatttattcaacgcctacgtggcaggccatgtgtg 1858160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 265 - 328
Target Start/End: Original strand, 5514063 - 5514126
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctac 328  Q
    |||||||||||| |||||| ||||||||||||| ||| ||||||||||||||||||| ||||||    
T  5514063 cctaaaatttagcccctttgcatctttggtccttttgatcaattttgacttattcaatgcctac 5514126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 344
Target Start/End: Complemental strand, 23169990 - 23169931
Alignment:
Q  285 catctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgt 344  Q
    |||||||  |||| ||||||||||||||||||||||| ||||||||||||| ||||||||    
T  23169990 catctttaatccttttggtcaattttgacttattcaatgcctacgtggcagaccatgtgt 23169931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 24123919 - 24123869
Alignment:
Q  263 ctcctaaaatttagtccctttacatctttggtcctattggtcaattttgac 313  Q
    ||||||| |||||| |||||| ||||||||||||| |||||||||||||||    
T  24123919 ctcctaagatttagcccctttgcatctttggtccttttggtcaattttgac 24123869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 344
Target Start/End: Complemental strand, 5514265 - 5514219
Alignment:
Q  299 ttggtcaattttgacttattcaacgcctacgt-ggcaggccatgtgt 344  Q
    ||||||||||||||||||||||| |||||||| ||||||||| ||||    
T  5514265 ttggtcaattttgacttattcaatgcctacgtgggcaggccacgtgt 5514219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 30335721 - 30335769
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgac 313  Q
    ||||| |||||| |||||| ||||||||||||| ||| |||||||||||    
T  30335721 cctaagatttagcccctttgcatctttggtccttttgttcaattttgac 30335769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 265 - 345
Target Start/End: Original strand, 7500536 - 7500616
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||| |||||| |||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7500536 cctaagatttagcccctttgcatctttgatccttttggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 7500616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 22629568 - 22629636
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggc 333  Q
    ||||| |||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22629568 cctaagatttagcccctttgcatctttggtccttttggtcaattttgacttattcaacgcctacgtggc 22629636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 7501858 - 7501791
Alignment:
Q  278 ccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  7501858 ccctttgcatctttggtccttttggtcaattttgacttattcaatgcctacgtggcaggccacgtgtg 7501791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 285 - 344
Target Start/End: Original strand, 18371526 - 18371585
Alignment:
Q  285 catctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgt 344  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  18371526 catctttgatccttttggtcaattttgacttattcaacgcctacgtggcaggccacgtgt 18371585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 271 - 345
Target Start/End: Original strand, 47369869 - 47369943
Alignment:
Q  271 atttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    |||||| |||||| ||||||| ||  | ||||||||||||||||||||||||||||| ||||||||||| |||||    
T  47369869 atttagcccctttgcatctttagttattttggtcaattttgacttattcaacgcctatgtggcaggccacgtgtg 47369943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 18372476 - 18372408
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggc 333  Q
    ||||| |||||| ||||||  |||||||||||| ||||||||||||||||||||||||| ||| |||||    
T  18372476 cctaagatttagcccctttgtatctttggtccttttggtcaattttgacttattcaacgtctatgtggc 18372408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 22630450 - 22630391
Alignment:
Q  286 atctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    |||||||||||| |||||||||||||||||||||||||| || |||| |||||| |||||    
T  22630450 atctttggtccttttggtcaattttgacttattcaacgcttatgtggtaggccacgtgtg 22630391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 345
Target Start/End: Original strand, 46482708 - 46482759
Alignment:
Q  294 tcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    |||| ||||||||||||||||||||||| |||||||||||| ||||||||||    
T  46482708 tccttttggtcaattttgacttattcaatgcctacgtggcaagccatgtgtg 46482759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 43900488 - 43900428
Alignment:
Q  285 catctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    |||||||| |||| ||| |||||||| | |||||||||||||||||| ||| |||||||||    
T  43900488 catctttgatccttttgatcaattttaatttattcaacgcctacgtgacagaccatgtgtg 43900428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 14998062 - 14998107
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaatttt 310  Q
    ||||| |||||| |||||| ||||||||||||| ||||||||||||    
T  14998062 cctaagatttagcccctttgcatctttggtccttttggtcaatttt 14998107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 770780 - 770732
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgac 313  Q
    |||||||||||| |||||| |||||||| || | |||||||||||||||    
T  770780 cctaaaatttagcccctttgcatctttgatcattttggtcaattttgac 770732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 32253446 - 32253398
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgac 313  Q
    ||||| ||||||||||||| ||||||||||||| ||||  |||||||||    
T  32253446 cctaagatttagtccctttgcatctttggtccttttggcaaattttgac 32253398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 265 - 345
Target Start/End: Complemental strand, 18486921 - 18486841
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||| |||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  18486921 cctaagatttagcccctttgcatctttggtccttttggtcaattttgacttattcaacgcctacgtggcaggccacgtgtg 18486841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 271 - 345
Target Start/End: Original strand, 19752999 - 19753073
Alignment:
Q  271 atttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    |||||| ||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  19752999 atttagccccattgcatctttggtccttttggtcaattttgacttattcaacgcctacgtggcaggccacgtgtg 19753073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 265 - 345
Target Start/End: Original strand, 18485227 - 18485307
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||| |||||| |||||| |||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| |||||    
T  18485227 cctaagatttagcccctttgcatctttgatccttttggttaattttgacttattcaacgcctacgtggcaggccacgtgtg 18485307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 265 - 345
Target Start/End: Complemental strand, 25524117 - 25524037
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||| |||||| |||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||| |||||    
T  25524117 cctaagatttagcccctttgcatctttagtccttttggtcaattttgacttattcaacgcctacgtggcagaccacgtgtg 25524037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 2686400 - 2686340
Alignment:
Q  285 catctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||  |||||||||||||    
T  2686400 catctttggtccttttgatcaattttgacttattcaacgcctacgtatcaggccatgtgtg 2686340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 271 - 345
Target Start/End: Complemental strand, 19754143 - 19754069
Alignment:
Q  271 atttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    |||||| ||| || ||||||||||||| |||  ||||||||||||||||||||||||||||| |||||| |||||    
T  19754143 atttagccccattgcatctttggtccttttgaacaattttgacttattcaacgcctacgtggaaggccacgtgtg 19754069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 25523151 - 25523219
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggc 333  Q
    ||||| |||||| |||||| |||||||| |||| ||| |||||||||| ||||||||||||||||||||    
T  25523151 cctaagatttagcccctttgcatctttgatccttttgatcaattttgatttattcaacgcctacgtggc 25523219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 344
Target Start/End: Complemental strand, 22940642 - 22940563
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgt 344  Q
    |||||||||||| |||||| |||||||  |||| |||||||||||||||  | |||||||||| |||||| |||| ||||    
T  22940642 cctaaaatttagccccttttcatcttttatccttttggtcaattttgaccaagtcaacgcctaagtggcatgccacgtgt 22940563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 42195214 - 42195262
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgac 313  Q
    ||||| |||||| |||||| ||||||||||||| |||||||||||||||    
T  42195214 cctaagatttagcccctttgcatctttggtccttttggtcaattttgac 42195262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 345
Target Start/End: Original strand, 24333008 - 24333074
Alignment:
Q  278 ccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    |||||| ||||||||||||| |||||||||||||||  | |||| |||||||||||| |||| |||||    
T  24333008 ccctttgcatctttggtccttttggtcaattttgac-cagtcaatgcctacgtggcatgccacgtgtg 24333074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 313
Target Start/End: Original strand, 2186868 - 2186900
Alignment:
Q  281 tttacatctttggtcctattggtcaattttgac 313  Q
    ||||||||||||||||| |||||||||||||||    
T  2186868 tttacatctttggtccttttggtcaattttgac 2186900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 42196219 - 42196171
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgac 313  Q
    ||||| |||||| || ||| ||||||||||||| |||||||||||||||    
T  42196219 cctaagatttagcccatttgcatctttggtccttttggtcaattttgac 42196171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 265 - 345
Target Start/End: Original strand, 7314961 - 7315041
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||| |||||| |||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||    
T  7314961 cctaagatttagcccctttgcatctttggtcattttggtcaattttgacttattcaacgcctacgtggcaggccacgtgtg 7315041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 271 - 345
Target Start/End: Complemental strand, 7316307 - 7316233
Alignment:
Q  271 atttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    |||||| |||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| |||||    
T  7316307 atttagcccctttgcatctatggtccttttggtcaattttgacttattcaacgcctacgtggcaagccacgtgtg 7316233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 17496895 - 17496943
Alignment:
Q  280 ctttacatctttggtcctattggtcaattttgacttattcaacgcctac 328  Q
    |||| ||||||||||||| ||| ||||||||||||||||||||||||||    
T  17496895 ctttgcatctttggtccttttgatcaattttgacttattcaacgcctac 17496943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 1829622 - 1829574
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgac 313  Q
    ||||| |||||| |||||| ||||||||||| | |||||||||||||||    
T  1829622 cctaagatttagcccctttgcatctttggtcattttggtcaattttgac 1829574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 265 - 345
Target Start/End: Complemental strand, 47615596 - 47615516
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||| |||||| |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  47615596 cctaagatttagcccctttgcatctttggtccttttggtcaattttgacttattcaatgcctacgtggcaggccacgtgtg 47615516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 12700275 - 12700335
Alignment:
Q  285 catctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  12700275 catctttggtccttttggtcaattttgacttattcaacgcctacgtggcaggccacgtgtg 12700335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 265 - 345
Target Start/End: Complemental strand, 34019164 - 34019084
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||||||||||  | ||| ||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| |||||    
T  34019164 cctaaaatttagctcatttgcatctttggtccttttggtcaattttgatttattcaacgcctacgtgacaggccacgtgtg 34019084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 265 - 345
Target Start/End: Original strand, 47614267 - 47614347
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||| |||||| | |||| |||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||    
T  47614267 cctaagatttagcctctttgcatctttggtgcttttggttaattttgacttattcaacgcctacgtggcaggccacgtgtg 47614347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 8876012 - 8876062
Alignment:
Q  289 tttggtcctattggtcaattttgacttattcaacgcctacgtggcaggcca 339  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  8876012 tttggtccttttagtcaattttgacttattcaacgcctacgtggcaggcca 8876062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 271 - 345
Target Start/End: Original strand, 11670472 - 11670546
Alignment:
Q  271 atttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    |||||||||| || ||| ||| ||||| ||| |||||||||||||||||||||| |||||||||||||| |||||    
T  11670472 atttagtcccattgcattttttgtccttttgatcaattttgacttattcaacgcttacgtggcaggccacgtgtg 11670546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 11671347 - 11671299
Alignment:
Q  278 ccctttacatctttggtcctattggtcaattttgacttattcaacgcct 326  Q
    |||||||||||||||||||| ||| |||||||||| |||||||||||||    
T  11671347 ccctttacatctttggtccttttgatcaattttgatttattcaacgcct 11671299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 52105686 - 52105627
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgc 324  Q
    |||||||||||| | |||||||||||||||||| |||| ||||||||||||  |||||||    
T  52105686 cctaaaatttagcctctttacatctttggtccttttggccaattttgacttggtcaacgc 52105627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 345
Target Start/End: Complemental strand, 12703513 - 12703439
Alignment:
Q  271 atttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    |||||| ||| || ||||||||||| | |||   ||||||||||||||||||||||||||||||| ||| |||||    
T  12703513 atttagccccattgcatctttggtcattttgaataattttgacttattcaacgcctacgtggcagaccacgtgtg 12703439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 335
Target Start/End: Complemental strand, 17776836 - 17776800
Alignment:
Q  299 ttggtcaattttgacttattcaacgcctacgtggcag 335  Q
    ||||||||||||||||||||||||||||| |||||||    
T  17776836 ttggtcaattttgacttattcaacgcctatgtggcag 17776800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 335
Target Start/End: Complemental strand, 19078137 - 19078101
Alignment:
Q  299 ttggtcaattttgacttattcaacgcctacgtggcag 335  Q
    ||||||||||||||||||||||||||||| |||||||    
T  19078137 ttggtcaattttgacttattcaacgcctatgtggcag 19078101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 344
Target Start/End: Original strand, 7758484 - 7758563
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgt 344  Q
    ||||| |||||  ||||||  |||||||||||| ||||||||||||||| || ||||||| || |||||| |||| ||||    
T  7758484 cctaagatttaacccctttgtatctttggtccttttggtcaattttgacctagtcaacgcttaagtggcatgccacgtgt 7758563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 19984944 - 19985004
Alignment:
Q  278 ccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggcca 339  Q
    |||||| ||||||||||||| |||||||||||||||  | |||| |||||||||||| ||||    
T  19984944 ccctttgcatctttggtccttttggtcaattttgac-cagtcaatgcctacgtggcatgcca 19985004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 345
Target Start/End: Complemental strand, 8593125 - 8593085
Alignment:
Q  305 aattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||||||||||||||||||||| ||||||| ||| |||||    
T  8593125 aattttgacttattcaacgcctatgtggcagaccacgtgtg 8593085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 270 - 345
Target Start/End: Original strand, 39221401 - 39221476
Alignment:
Q  270 aatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||||| |||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||    
T  39221401 aatttagcccctttgcatctttggtccttttggtcaattttgactaattcaacgcctacgtggcaggccacgtgtg 39221476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 265 - 345
Target Start/End: Original strand, 36612934 - 36613014
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||| ||||||||||||| ||||||||||| | |||||||||||| ||||||||||||| |||||||||||||| |||||    
T  36612934 cctaagatttagtccctttgcatctttggtcattttggtcaattttaacttattcaacgcttacgtggcaggccacgtgtg 36613014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 43060005 - 43059951
Alignment:
Q  285 catctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggcca 339  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  43060005 catctttggtccttttggtcaattttgacttattcaacgcctacgtggcaggcca 43059951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 271 - 345
Target Start/End: Complemental strand, 50681621 - 50681547
Alignment:
Q  271 atttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    |||||| | |||| ||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||    
T  50681621 atttagcctctttgcatctttggtcctattgatcaattttgatttattcaacgcctacatggcaggccatgtgtg 50681547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 265 - 345
Target Start/End: Complemental strand, 37526897 - 37526817
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||| |||||| |||||| ||||||||||| | ||| |||||||||||||||||||||||||||||| |||||| |||||    
T  37526897 cctaagatttagcccctttgcatctttggtctttttgatcaattttgacttattcaacgcctacgtggtaggccacgtgtg 37526817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 265 - 345
Target Start/End: Original strand, 50680413 - 50680493
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||| |||||  |||||| |||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |||||    
T  50680413 cctaagatttaacccctttgcatctttgatccttttggtcaattttgacttattcaacgcctacgtagcaggccacgtgtg 50680493  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 266 - 345
Target Start/End: Original strand, 25652797 - 25652876
Alignment:
Q  266 ctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    |||| |||||| || ||| ||||||||||| | |||| ||||||||||||||||||||||||||||||||||||| ||||    
T  25652797 ctaagatttagcccatttgcatctttggtcattttggccaattttgacttattcaacgcctacgtggcaggccatatgtg 25652876  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 345
Target Start/End: Complemental strand, 36613923 - 36613843
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||| |||||| | |||| || |||| ||||| ||| ||||||||||||||||||||||||||||||||||||| |||||    
T  36613923 cctaagatttagcctctttgcaactttagtccttttgatcaattttgacttattcaacgcctacgtggcaggccacgtgtg 36613843  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 265 - 335
Target Start/End: Complemental strand, 51685784 - 51685714
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcag 335  Q
    ||||| |||||| |||||| ||||||||||||| |||| ||||||| ||  ||||||||||||||||||||    
T  51685784 cctaagatttagcccctttgcatctttggtccttttggccaattttaaccaattcaacgcctacgtggcag 51685714  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 39222472 - 39222423
Alignment:
Q  285 catctttggtcctattggtcaattttgacttattcaacgcctacgtggca 334  Q
    ||||||||||| | |||| |||||||||||||||||||||||||||||||    
T  39222472 catctttggtctttttgggcaattttgacttattcaacgcctacgtggca 39222423  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 43058868 - 43058925
Alignment:
Q  266 ctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacg 323  Q
    |||| |||||| ||||||||||||||| |||| |||||||||||||||||||| ||||    
T  43058868 ctaagatttagcccctttacatctttgatccttttggtcaattttgacttattgaacg 43058925  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 43377800 - 43377850
Alignment:
Q  263 ctcctaaaatttagtccctttacatctttggtcctattggtcaattttgac 313  Q
    |||||||||||||||| ||||||| ||||| |||| |||||||||||||||    
T  43377800 ctcctaaaatttagtctctttacacctttgatccttttggtcaattttgac 43377850  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 345
Target Start/End: Original strand, 35594297 - 35594377
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    |||||||||||| |||||| ||||||||||||| || | ||||||||||||  ||||||| ||  ||||| |||| |||||    
T  35594297 cctaaaatttagcccctttgcatctttggtccttttagccaattttgacttggtcaacgcttatttggcatgccacgtgtg 35594377  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 35595211 - 35595163
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgac 313  Q
    ||||| |||||| |||||| ||||||||||||| |||||||||||||||    
T  35595211 cctaagatttagcccctttgcatctttggtccttttggtcaattttgac 35595163  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 39153122 - 39153056
Alignment:
Q  278 ccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    |||||| ||||||||||||| |||||||||||||||  | |||| |||||||||||| |||| |||||    
T  39153122 ccctttgcatctttggtccttttggtcaattttgac-cagtcaatgcctacgtggcatgccacgtgtg 39153056  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 345
Target Start/End: Complemental strand, 23980460 - 23980414
Alignment:
Q  299 ttggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    |||||||||||||| ||||||||||||||||| |||| ||| |||||    
T  23980460 ttggtcaattttgaattattcaacgcctacgtagcagaccacgtgtg 23980414  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 333
Target Start/End: Original strand, 7674596 - 7674625
Alignment:
Q  304 caattttgacttattcaacgcctacgtggc 333  Q
    ||||||||||||||||||||||||||||||    
T  7674596 caattttgacttattcaacgcctacgtggc 7674625  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 39152026 - 39152086
Alignment:
Q  278 ccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggcca 339  Q
    |||||| ||||||||||||| |||||||||||||||  | |||| |||||||||||| ||||    
T  39152026 ccctttgcatctttggtccttttggtcaattttgac-cagtcaatgcctacgtggcatgcca 39152086  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 313
Target Start/End: Original strand, 40384802 - 40384855
Alignment:
Q  260 gatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgac 313  Q
    |||| |||||||||||| | |||| ||||||||||||| |||| ||||||||||    
T  40384802 gatcccctaaaatttagcctctttgcatctttggtccttttggccaattttgac 40384855  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 51684448 - 51684496
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgac 313  Q
    ||||| |||||| |||||| ||||||||||||| |||| ||||||||||    
T  51684448 cctaagatttagcccctttgcatctttggtccttttggccaattttgac 51684496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 52275074 - 52275130
Alignment:
Q  289 tttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    |||| |||| ||||||||||||||| || ||||||||| ||||||| |||| |||||    
T  52275074 tttgatccttttggtcaattttgacatagtcaacgcctgcgtggcatgccaagtgtg 52275130  T

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Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 265 - 345
Target Start/End: Original strand, 22848273 - 22848353
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||| |||||| |||||| || |||||||||| ||| |||||||||||||||||||||||||||||||| |||| |||||    
T  22848273 cctaagatttagcccctttgcagctttggtccttttgatcaattttgacttattcaacgcctacgtggcaagccacgtgtg 22848353  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 13030391 - 13030445
Alignment:
Q  285 catctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggcca 339  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  13030391 catctttggtcattttggtcaattttgacttattcaacgcctacgtggcaggcca 13030445  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 268 - 335
Target Start/End: Original strand, 21837124 - 21837191
Alignment:
Q  268 aaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcag 335  Q
    ||||||||| |||||| ||||||||||| | ||| |||||||||||||||||||||||||| ||||||    
T  21837124 aaaatttagcccctttgcatctttggtcattttgatcaattttgacttattcaacgcctacatggcag 21837191  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 18869161 - 18869101
Alignment:
Q  285 catctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||||||||| | ||| ||||||||||||||||||||||||| ||||||||||| |||||    
T  18869161 catctttggtctttttgatcaattttgacttattcaacgcctatgtggcaggccacgtgtg 18869101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 18905987 - 18905927
Alignment:
Q  285 catctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||| |||||    
T  18905987 catctttggtctttttgatcaattttgacttattcaacgcctacgtggcagaccacgtgtg 18905927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 345
Target Start/End: Original strand, 28618003 - 28618083
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    ||||| |||||| |||||| ||||||||||  | |||||| ||||||||| |||||| ||||||||||||| ||| |||||    
T  28618003 cctaagatttagcccctttgcatctttggttattttggtctattttgactaattcaatgcctacgtggcagaccacgtgtg 28618083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 345
Target Start/End: Original strand, 18797329 - 18797409
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggccatgtgtg 345  Q
    |||||||||||| |||||| ||||||||||||| || | ||||||||||||  ||||||| ||  ||||| |||| |||||    
T  18797329 cctaaaatttagcccctttgcatctttggtccttttagccaattttgacttggtcaacgcttatttggcatgccacgtgtg 18797409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 313
Target Start/End: Original strand, 11996802 - 11996837
Alignment:
Q  278 ccctttacatctttggtcctattggtcaattttgac 313  Q
    |||||||||||||||||||| |||||||||||||||    
T  11996802 ccctttacatctttggtccttttggtcaattttgac 11996837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 18904457 - 18904505
Alignment:
Q  273 ttagtccctttacatctttggtcctattggtcaattttgacttattcaa 321  Q
    |||| |||||||||||||||||||| |||| ||||||| ||||| ||||    
T  18904457 ttagcccctttacatctttggtccttttggccaattttaacttagtcaa 18904505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 260 - 339
Target Start/End: Original strand, 19565 - 19644
Alignment:
Q  260 gatctcctaaaatttagtccctttacatctttggtcctattggtcaattttgacttattcaacgcctacgtggcaggcca 339  Q
    |||| ||||| |||||  |||||| |||||||| || | |||||||||||||||||||||||||||||||||||||||||    
T  19565 gatcccctaagatttaacccctttgcatctttgatcattttggtcaattttgacttattcaacgcctacgtggcaggcca 19644  T

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Target: scaffold1303 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 1521 - 1569
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgac 313  Q
    ||||| |||||| || ||| ||||||||||||| |||||||||||||||    
T  1521 cctaagatttagcccatttgcatctttggtccttttggtcaattttgac 1569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 48389 - 48436
Alignment:
Q  265 cctaaaatttagtccctttacatctttggtcctattggtcaattttgac 313  Q
    ||||| ||||| ||||||| ||||||||||||| |||||||||||||||    
T  48389 cctaagatttattccctttgcatctttggtcct-ttggtcaattttgac 48436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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