View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3579_low_8 (Length: 427)

Name: NF3579_low_8
Description: NF3579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3579_low_8
NF3579_low_8
[»] chr5 (4 HSPs)
chr5 (10-427)||(18312227-18312658)
chr5 (16-370)||(16842823-16843189)
chr5 (373-427)||(24510748-24510802)
chr5 (303-370)||(24510824-24510891)
[»] chr1 (2 HSPs)
chr1 (74-137)||(14911278-14911341)
chr1 (26-101)||(672552-672627)
[»] scaffold0533 (1 HSPs)
scaffold0533 (30-137)||(2279-2385)
[»] scaffold0005 (2 HSPs)
scaffold0005 (18-137)||(169940-170058)
scaffold0005 (303-370)||(170308-170375)
[»] chr4 (2 HSPs)
chr4 (18-137)||(14647232-14647350)
chr4 (303-370)||(14646915-14646982)
[»] chr6 (5 HSPs)
chr6 (20-80)||(12747323-12747383)
chr6 (373-426)||(13483980-13484033)
chr6 (382-427)||(31124543-31124588)
chr6 (91-135)||(6872271-6872314)
chr6 (85-145)||(31124250-31124310)
[»] chr3 (1 HSPs)
chr3 (85-137)||(5535998-5536050)
[»] chr8 (2 HSPs)
chr8 (32-145)||(21836629-21836741)
chr8 (168-285)||(21836780-21836897)
[»] chr7 (2 HSPs)
chr7 (76-137)||(12506521-12506581)
chr7 (76-129)||(12657721-12657774)
[»] scaffold0422 (1 HSPs)
scaffold0422 (90-142)||(7828-7879)


Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 10 - 427
Target Start/End: Complemental strand, 18312658 - 18312227
Alignment:
Q  10 aagaatatttgatttgtgttacttgtgctccaagaagagtgcggttctagaagctttccagtgccggtttaatgttgccatatatttgaagtgtatttca 109  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  18312658 aagaatatttgatttgtgttacttgtgctccaagaagagtgtggttctagaagcttgccagtgccggtttaatgttgccatatatttgaagtgtatttga 18312559  T
Q  110 aaaatagatttgggaaaaatatattttgcttctagaggat---------------aattattgtcagctgaaattgtttagccattgtgaagaaaagcgt 194  Q
    ||| ||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||  |||||||||||||||    
T  18312558 aaa-tagatttgggaaaaatatattttgcttctagaggattgtagctgaaaatgtaattattgtcagctgaaattgtttagcccgtgtgaagaaaagcgt 18312460  T
Q  195 atttagaaccatggttatataaggagacttagacctaatctccattcacgaaattaggattagaagaattgattcattagagtttcgttgttaattaaga 294  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18312459 atttagaaccatggttatataaggagacttagacctactctccattcacgaaatcaggattagaagaattgattcattagagtttcgttgttaattaaga 18312360  T
Q  295 gttgtcctttattttgtattcctctcttgcgctgccattgaatatcaaaagacagagagttggtttgtttagttgatgccactctattgcttttagcaag 394  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||    
T  18312359 gttgtcctttattttgtatacctctcttgtgctgccattgaatatcaaaagattgagagttggtttgtttagttgatgtcactctattgcttttagcaag 18312260  T
Q  395 agttggtttgcgtttggagttgttcccctaata 427  Q
    |||||||||||| || ||||||||| |||||||    
T  18312259 agttggtttgcgcttagagttgttctcctaata 18312227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 370
Target Start/End: Complemental strand, 16843189 - 16842823
Alignment:
Q  16 atttgatttgtgttacttgtgctccaagaagagtgcggttctagaagctttccagtgccggtttaatgttgccatatatttgaagtgtatttcaaaaata 115  Q
    |||||||||||||||||||||||  |||||| ||| |||||||||||||  ||  ||||||||||||| | |||||||||||||||||||||| ||||||    
T  16843189 atttgatttgtgttacttgtgctataagaagcgtgtggttctagaagctggcccatgccggtttaatgcttccatatatttgaagtgtatttccaaaata 16843090  T
Q  116 gatttgggaaaaatatattttgcttctagagg---------------ataattattgtcagctg-aaattgtttagccattgtgaagaaaagcgtattta 199  Q
    ||||||||||||||||||||| |||||||| |               ||||||||||| ||||| ||||||| |||||  |||||||||||||  ||| |    
T  16843089 gatttgggaaaaatatattttacttctagaagattgtagctgaaaatataattattgtgagctgaaaattgtgtagcccatgtgaagaaaagcccattca 16842990  T
Q  200 gaaccatggttatataaggagacttagacctaatctccattcacgaaattaggattagaagaattgattcattagagtttcgttgttaattaagagttgt 299  Q
    ||||||||  |||||||||||||| | ||||| | || ||| ||||||| ||||||||||||||||| ||||||| ||||| |||    |||||  ||||    
T  16842989 gaaccatgactatataaggagactcatacctactatctatttacgaaatcaggattagaagaattgagtcattagggtttcattg----ttaagctttgt 16842894  T
Q  300 cctttattttgtattcctctcttgcgctgccattgaatatcaaaagacagagagttggtttgtttagttga 370  Q
    | |||||||||||| ||  ||||| | ||| ||||||||||||||| | ||||  ||||||||||| ||||    
T  16842893 cttttattttgtataccgttcttgtgttgctattgaatatcaaaaggctgagaactggtttgtttaattga 16842823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 427
Target Start/End: Complemental strand, 24510802 - 24510748
Alignment:
Q  373 ccactctattgcttttagcaagagttggtttgcgtttggagttgttcccctaata 427  Q
    |||||||  ||||| ||||||||||||||||| |||||||||||||| |||||||    
T  24510802 ccactctggtgcttctagcaagagttggtttgtgtttggagttgttctcctaata 24510748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 370
Target Start/End: Complemental strand, 24510891 - 24510824
Alignment:
Q  303 ttattttgtattcctctcttgcgctgccattgaatatcaaaagacagagagttggtttgtttagttga 370  Q
    ||||||||||  ||||| |||  | |||||||||||||||||| | ||| ||||||||||||||||||    
T  24510891 ttattttgtacacctctattgttccgccattgaatatcaaaaggctgagggttggtttgtttagttga 24510824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 14911278 - 14911341
Alignment:
Q  74 cggtttaatgttgccatatatttgaagtgtatttcaaaaatagatttgggaaaaatatattttg 137  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||    
T  14911278 cggtttaatgttgccatatatttgaattgtatttctaaaatagatttggtaaaaatatattttg 14911341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 672552 - 672627
Alignment:
Q  26 tgttacttgtgctccaagaagagtgcggttctagaagctttccagtgccggtttaatgttgccatatatttgaagt 101  Q
    ||||||||||||||||||||| ||| |||||||||||||| ||  ||| ||||||||||||   ||||||||||||    
T  672552 tgttacttgtgctccaagaagtgtgtggttctagaagcttgcctatgctggtttaatgttgttgtatatttgaagt 672627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 2385 - 2279
Alignment:
Q  30 acttgtgctccaagaagagtgcggttctagaagctttccagtgccggtttaatgttgccatatatttgaagtgtatttcaaaaatagatttgggaaaaat 129  Q
    ||||||||||||||||   || | |||||||||||| ||  || |||||||| |||| |||||||||| | |||||||| ||||||||||||| ||||||    
T  2385 acttgtgctccaagaaacatgtgtttctagaagctt-ccgttgtcggtttaaggttgtcatatatttgtattgtatttccaaaatagatttggtaaaaat 2287  T
Q  130 atattttg 137  Q
    ||||||||    
T  2286 atattttg 2279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 169940 - 170058
Alignment:
Q  18 ttgatttgtgttacttgtgctccaagaagagtgcggttctagaagctttccagtgccggtttaatgttgccatatatttgaagtgtatttcaaaaataga 117  Q
    ||||||| |||||||| |||||||||||| ||  ||||||| |||| ||||  || |||||||   || || | | |||||||| |||||| ||||||||    
T  169940 ttgatttatgttacttatgctccaagaagtgtttggttctataagccttcctctgtcggtttatattttccgtgtgtttgaagt-tatttccaaaataga 170038  T
Q  118 tttgggaaaaatatattttg 137  Q
    |||||||||| |||||||||    
T  170039 tttgggaaaactatattttg 170058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 370
Target Start/End: Original strand, 170308 - 170375
Alignment:
Q  303 ttattttgtattcctctcttgcgctgccattgaatatcaaaagacagagagttggtttgtttagttga 370  Q
    ||||||||||  ||||||||| || | |||| ||||||||||| | | ||||||||||||||||||||    
T  170308 ttattttgtacacctctcttgtgccgtcattcaatatcaaaaggctgggagttggtttgtttagttga 170375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 14647350 - 14647232
Alignment:
Q  18 ttgatttgtgttacttgtgctccaagaagagtgcggttctagaagctttccagtgccggtttaatgttgccatatatttgaagtgtatttcaaaaataga 117  Q
    ||||||| |||||||| |||||||||||| ||  ||||||| |||| ||||  || |||||||   || || | | |||||||| |||||| ||||||||    
T  14647350 ttgatttatgttacttatgctccaagaagtgtttggttctataagccttcctctgtcggtttatattttccgtgtgtttgaagt-tatttccaaaataga 14647252  T
Q  118 tttgggaaaaatatattttg 137  Q
    |||||||||| |||||||||    
T  14647251 tttgggaaaactatattttg 14647232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 370
Target Start/End: Complemental strand, 14646982 - 14646915
Alignment:
Q  303 ttattttgtattcctctcttgcgctgccattgaatatcaaaagacagagagttggtttgtttagttga 370  Q
    ||||||||||  ||||||||| || | |||| ||||||||||| | | ||||||||||||||||||||    
T  14646982 ttattttgtacacctctcttgtgccgtcattcaatatcaaaaggctgggagttggtttgtttagttga 14646915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 12747383 - 12747323
Alignment:
Q  20 gatttgtgttacttgtgctccaagaagagtgcggttctagaagctttccagtgccggttta 80  Q
    ||||| |||||||||||| |||||||| ||| |||||||||||| ||||  ||||||||||    
T  12747383 gatttatgttacttgtgcaccaagaagtgtgtggttctagaagcgttcctatgccggttta 12747323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 373 - 426
Target Start/End: Complemental strand, 13484033 - 13483980
Alignment:
Q  373 ccactctattgcttttagcaagagttggtttgcgtttggagttgttcccctaat 426  Q
    |||||||| || ||||||||||||||||||||  |||| |||||||| ||||||    
T  13484033 ccactctagtgattttagcaagagttggtttgtttttgaagttgttctcctaat 13483980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 382 - 427
Target Start/End: Original strand, 31124543 - 31124588
Alignment:
Q  382 tgcttttagcaagagttggtttgcgtttggagttgttcccctaata 427  Q
    ||||| ||||||||||||||||| |||| ||||||||| |||||||    
T  31124543 tgcttctagcaagagttggtttgtgttttgagttgttctcctaata 31124588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 6872314 - 6872271
Alignment:
Q  91 atatttgaagtgtatttcaaaaatagatttgggaaaaatatattt 135  Q
    ||||||||||| |||||| |||||||||||| |||||||||||||    
T  6872314 atatttgaagt-tatttccaaaatagatttgagaaaaatatattt 6872271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 31124250 - 31124310
Alignment:
Q  85 tgccatatatttgaagtgtatttcaaaaatagatttgggaaaaatatattttgcttctaga 145  Q
    |||| ||||||||||||  ||||| || ||||||||| |||||| ||||||| ||||||||    
T  31124250 tgccgtatatttgaagttaatttccaatatagatttgtgaaaaaaatatttttcttctaga 31124310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 5536050 - 5535998
Alignment:
Q  85 tgccatatatttgaagtgtatttcaaaaatagatttgggaaaaatatattttg 137  Q
    ||||||||||||||| |  ||||| ||||||||||||| ||||||||||||||    
T  5536050 tgccatatatttgaattacatttccaaaatagatttggtaaaaatatattttg 5535998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 21836629 - 21836741
Alignment:
Q  32 ttgtgctccaagaagagtgcggttctagaagctttccagtgccggtttaatgttgccatatatttgaagtgtatttcaaaaatagatttgggaaaaatat 131  Q
    ||||| ||||||||| ||| |||||||||||||| |  ||| || ||| |||||| | ||| ||||||||  ||||| || ||||||||| ||||| |||    
T  21836629 ttgtgttccaagaagcgtgtggttctagaagcttgcttgtgtcgattt-atgttgtcgtatttttgaagttaatttccaacatagatttgagaaaattat 21836727  T
Q  132 attttgcttctaga 145  Q
    ||| ||||| ||||    
T  21836728 attatgcttataga 21836741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 285
Target Start/End: Original strand, 21836780 - 21836897
Alignment:
Q  168 ttgtttagccattgtgaagaaaagcgtatttagaaccatggttatataaggagacttagacctaatctccattcacgaaattaggattagaagaattgat 267  Q
    ||||||||||  ||||||||||| |  ||  ||||| |||  |||||||||||||| ||||||| | || | |||| |||| | |  | ||||||||||     
T  21836780 ttgtttagcctgtgtgaagaaaatcccatgcagaacaatgactatataaggagactcagacctactttctactcacaaaatcaagcattgaagaattgag 21836879  T
Q  268 tcattagagtttcgttgt 285  Q
    ||||||||||||||||||    
T  21836880 tcattagagtttcgttgt 21836897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 12506581 - 12506521
Alignment:
Q  76 gtttaatgttgccatatatttgaagtgtatttcaaaaatagatttgggaaaaatatattttg 137  Q
    ||||||||||| | |||||||||| |||||||  ||||||||||||| ||||| ||||||||    
T  12506581 gtttaatgttggcgtatatttgaattgtatttgcaaaatagatttggtaaaaa-atattttg 12506521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 12657774 - 12657721
Alignment:
Q  76 gtttaatgttgccatatatttgaagtgtatttcaaaaatagatttgggaaaaat 129  Q
    ||||||||||| | |||||||||| |||||||  ||||||||||||| ||||||    
T  12657774 gtttaatgttgtcgtatatttgaattgtatttgcaaaatagatttggtaaaaat 12657721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0422 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 7828 - 7879
Alignment:
Q  90 tatatttgaagtgtatttcaaaaatagatttgggaaaaatatattttgcttct 142  Q
    |||||||||||| |||||  |||||||||||| |||||||||||||| |||||    
T  7828 tatatttgaagt-tattttcaaaatagatttgagaaaaatatattttacttct 7879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University