View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3579_low_9 (Length: 409)
Name: NF3579_low_9
Description: NF3579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3579_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 403
Target Start/End: Complemental strand, 48016714 - 48016328
Alignment:
| Q |
17 |
acatggaaggaacacataaagttgctggtgattttctcattgcactcgtcagccaacagctttaaaaagactaagtcaatccagattagcatttaattat |
116 |
Q |
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| T |
48016714 |
acatggaaggaacacataaagttgatggtgattttctcattgcactcgtcagccaacagctttaaaaagactatgtcaatccagattagcatttaattat |
48016615 |
T |
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| Q |
117 |
gtataaattttgtagtcatggaaacaatgattacaaatttaaacaagccatgaagtgacattgaaggaacatgttacgttgaccgccacaaacaaaaact |
216 |
Q |
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| T |
48016614 |
gtataaattttgtagtcatggaaacaatgattacaaatttaaacaagccatgaagtgacattgaaggaacatgttacgttgaccgccacaaacaaaaact |
48016515 |
T |
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| Q |
217 |
gcacatcggagcaagtaacattgcttctcttatctcatccatccatgtcttccttcattaacttcccccaatctgcacaatcattttggaatgatcacac |
316 |
Q |
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| T |
48016514 |
gcacatcggagcaagcaacattgcttctcttatctcatccatccatgtcttccttcattaacttcccccaatctgcacaatcattttggaatgatcacac |
48016415 |
T |
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| Q |
317 |
atcaatgaagaatgcctcgaaagaattaaggattaatgaagtgttcctaagttttcgaggcaaagacacacgtgcttcctttgcttc |
403 |
Q |
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| T |
48016414 |
atcaatgaagaatgcctcgaaagaattaaggattaatgaagtgttcctaagttttcgaggcaaagacacacgtgcttcctttacttc |
48016328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 202
Target Start/End: Complemental strand, 5166674 - 5166586
Alignment:
| Q |
115 |
atgtataaattttgtagtcatggaaacaatgattacaaatttaaacaagccatgaagtgacattgaaggaac--atgttacgttgaccgc |
202 |
Q |
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| T |
5166674 |
atgtataaattttgtcgttatggaaagaatgatt-taaatcaaaacaagccatgaagtgacaaggaagaaacatatgttacgttgaccgc |
5166586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 5268723 - 5268799
Alignment:
| Q |
108 |
tttaattatgtataaattttgtagtcatggaaacaatgattacaaatttaaacaagccatgaagtgacattgaaggaa |
185 |
Q |
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||||||||||||||||| |||| || ||||||||||| |||| |||| |||||||||||||| ||||| ||||||| |
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| T |
5268723 |
tttaattatgtataaatattgtcgtgatggaaacaataatta-aaatccaaacaagccatgaactgacaaggaaggaa |
5268799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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